View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_low_3 (Length: 417)
Name: NF20797_low_3
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 4489042 - 4489441
Alignment:
| Q |
1 |
agtcatgttaacaaaagtaagggaaacataaaagttccgactttcatacagaatgcaagactgccaatcataagtcataatagccctataatatgttaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4489042 |
agtcatgttaacaaaagtaagggaaacataaaagttctgactttcatacagaatgcgagactgccaatcataagtcataacagccctataatatgttaga |
4489141 |
T |
|
| Q |
101 |
ccagcaaacctggttctaaagtaaacatataaataaacgcacaaaaacacaacagttgatcatagagtttggcccattgttcctacgtcttcgacggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4489142 |
ccagcaaacctggttctaaagtaaacatataaataaacgcacaaaaacacaacagttgatcatagagtttggccaattgttcctacgtcttcgacggtga |
4489241 |
T |
|
| Q |
201 |
tcaaaattcattaaccaatctcttcaagatacaaatgcatcttcattttacagaaaaaatgtttttcaacttttaaatgcctaaaattgttactttgtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4489242 |
tcaaaattcattaaccaatctcttcaagatacaaatgcatcttcattttacagaaaaaatgtttttcaacttttaaatgcataaaattgttactttgtat |
4489341 |
T |
|
| Q |
301 |
tgtnnnnnnnnnnnnnnnnctgttaattgttaaacacaataaacaatcatattacttggtgtgggaacgacaactataccagcatgaacatgtatgagct |
400 |
Q |
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| T |
4489342 |
tgtaaaagaaaaacaaaaactattaattgttaaacacaataaacaatcatattacttggtgtgggaacgacaactataccagcatgaacatgtatgagct |
4489441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22622445 - 22622683
Alignment:
| Q |
1 |
agtcatgttaacaaaagtaagggaaacataaaagttccgactttcatacagaatgcaagactgccaatcataagtcataatagccctataatatgttaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
22622445 |
agtcatgttaacaaaagtaagggaaacataaaagttctgactttcatacagaatgcaagactgccaatcataagtcatagcagccctacaatatgctaga |
22622544 |
T |
|
| Q |
101 |
ccagcaaacctggttctaaagtaaacatataaataaacgcacaaaaacacaacagttgatcatagagtttggcccattgttcctacgtcttcgacggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
22622545 |
ccagcaaacctggttctaaagtaaacatataaataaacgcacaaaaacacaacaattgatcatagagttcggccaattgttcttacgtcttcgacggtga |
22622644 |
T |
|
| Q |
201 |
tcaaaattcattaaccaatctcttcaagatacaaatgca |
239 |
Q |
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| T |
22622645 |
tcaaaattcattaaccaatctcttcaagatacaaatgca |
22622683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14245298 - 14245538
Alignment:
| Q |
1 |
agtcatgttaacaaaagtaagggaaacataaaagttcc--gactttcatacagaatgcaagactgccaatcataagtcataatagccctataatatgtta |
98 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
14245298 |
agtcatgttagcaaaagtaagggaaacataaaagttccctgactttgatacagaatgcaagactgccaatcataagtcataacagccctggaatatgtta |
14245397 |
T |
|
| Q |
99 |
gaccagcaaacctggttctaaagtaaacatataaataaacgcacaaaaacacaacagttgatcatagagtttggcccattgttcctacgtcttcgacggt |
198 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| ||| ||| || ||| |||||||||||| |
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| T |
14245398 |
gaccagtaaacctggttctaaagtaaacgtataaataaacgcataaaaacacaacaattgatcatagagttctgccgattattgctatgtcttcgacggt |
14245497 |
T |
|
| Q |
199 |
gatcaaaattcattaaccaatctcttcaagatacaaatgca |
239 |
Q |
| |
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||||||| || |||||||||| ||||||||| ||||||| |
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| T |
14245498 |
gatcaaacttagttaaccaatcaattcaagataaaaatgca |
14245538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 14245637 - 14245710
Alignment:
| Q |
327 |
ttgttaaacacaataaacaatcatattacttggtgtgggaacgacaactataccagcatgaacatgtatgagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
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| T |
14245637 |
ttgttaaacacaataaacaatcatattacttgatgtgggaacgccaactataccagcatggacatgtatgagct |
14245710 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6355848 - 6356088
Alignment:
| Q |
1 |
agtcatgttaacaaaagtaagggaaacataaaagttcc--gactttcatacagaatgcaagactgccaatcataagtcataatagccctataatatgtta |
98 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||| |
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| T |
6355848 |
agtcatgttagcaaaagtaagggaaacataaaagttccctgactttgatacagaatgcaagactgccaatcataagtcataacaaccctggaatatgtta |
6355947 |
T |
|
| Q |
99 |
gaccagcaaacctggttctaaagtaaacatataaataaacgcacaaaaacacaacagttgatcatagagtttggcccattgttcctacgtcttcgacggt |
198 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| ||| ||| || ||| |||||||||||| |
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| T |
6355948 |
gaccagtaaacctggttctaaagtaaacgtataaataaacgcaaaaaaacacaacaattgatcatagagttctgccgattattactatgtcttcgacggt |
6356047 |
T |
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| Q |
199 |
gatcaaaattcattaaccaatctcttcaagatacaaatgca |
239 |
Q |
| |
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||||||| || |||||||||| ||||||||| ||||||| |
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| T |
6356048 |
gatcaaacttagttaaccaatcaattcaagataaaaatgca |
6356088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 6356208 - 6356280
Alignment:
| Q |
328 |
tgttaaacacaataaacaatcatattacttggtgtgggaacgacaactataccagcatgaacatgtatgagct |
400 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
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| T |
6356208 |
tgttaaacacaataaacaatcatattacttgatgtgggaacgccaactataccagcatggacatgtatgagct |
6356280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 6356135 - 6356182
Alignment:
| Q |
254 |
aaaaaatgtttttcaacttttaaatgcctaaaattgttactttgtatt |
301 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
6356135 |
aaaaagtgtttatcaacttttaaatgcaaaaaattgttactttgtatt |
6356182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 400
Target Start/End: Original strand, 1410687 - 1410825
Alignment:
| Q |
263 |
ttttcaacttttaaatgcctaaaattgttactttgtattgtnnnnnnnnnnnnnnnnctgttaatt-gttaaacacaataaacaatcatattacttggtg |
361 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
1410687 |
ttttcaacttttaaatgcataaaattgttactttgtattgtaaaagaaaaacaaaaattgttaatttgttaaacacaataaacaatgatattacttggtg |
1410786 |
T |
|
| Q |
362 |
tgggaacgacaactataccagcatgaacatgtatgagct |
400 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
1410787 |
tgggaacgccaactataccagcatgaacatgtatgagct |
1410825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 1410407 - 1410500
Alignment:
| Q |
102 |
cagcaaacctggttctaaagtaaacatataaataaacgcacaaaaa-cacaacagttgatcatagagtttggcccattgttcctacgtcttcgac |
195 |
Q |
| |
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||||| || ||||||||| ||||||||||||||||| ||||||||| ||||| | |||||||||||||| ||| |||||||||||||||||||| |
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| T |
1410407 |
cagcacacttggttctaa-gtaaacatataaataaatgcacaaaaaacacaaaaattgatcatagagttcagccaattgttcctacgtcttcgac |
1410500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1410285 - 1410373
Alignment:
| Q |
1 |
agtcatgttaacaaaagtaagggaaacataaaagttcc--gactttcatacagaatgcaagactgccaatcataagtcataatagccct |
87 |
Q |
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|||||||||| ||||||||| ||| | ||||||||||| |||||| | |||||||||| |||||||||||||||||||||| |||||| |
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| T |
1410285 |
agtcatgttagcaaaagtaacggatatataaaagttccctgactttgacacagaatgcaggactgccaatcataagtcataacagccct |
1410373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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