View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_low_4 (Length: 408)
Name: NF20797_low_4
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 49655940 - 49656313
Alignment:
| Q |
1 |
atttcaattacaaatttaaaaccgtccccaagcgcatagttcatttatata------ggttgagatgttgaaagagtattacaaaaaaggtccatatatg |
94 |
Q |
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| T |
49655940 |
atttcaattacaaatttaaaaccgtccccgagcgcatagttcatttatatatatataggttgagatgttgaaagagtattacaaaaaaggtccata---- |
49656035 |
T |
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| Q |
95 |
actctaacattaacaaattaatcactaacgtttgtctattaaaaaattataagtctaaaactattcaagacgttaccaattattcaagtgctttataggt |
194 |
Q |
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| T |
49656036 |
------acattaacaaattaatcactaacgtttgtctattaaaaaattataagtctaaaactattcaaaacgttaccaattattcaagtgctt------- |
49656122 |
T |
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| Q |
195 |
tcttgttaatgaaatcatattgagacaagtaagtggctaatcaaacttttccaatagatatgttttgtagaagttagaatttcacgtcagacaccgtatt |
294 |
Q |
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| T |
49656123 |
----gttaatgaaatcatattgagacaagtaagtggctaatcaaacttttccaatagatatgttttgtagaaattagaatttcacgtcagacaccgtatt |
49656218 |
T |
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| Q |
295 |
ccaaacacattctacatggtttctgattatatattaactccctcaccctctcttgcgaatgcgaacaccctcaggctaaagtgtatttcatacga |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||| |
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| T |
49656219 |
ccaaacacattctacatggtttctgattatatattaactccctcaccctcccttgtgaatgtgaacaccctcaggctaaggtgtatttcatacga |
49656313 |
T |
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