View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20798_low_3 (Length: 360)
Name: NF20798_low_3
Description: NF20798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20798_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 167 - 347
Target Start/End: Original strand, 2569616 - 2569795
Alignment:
| Q |
167 |
aaattcgaacccattctgcatacccatttttagcgttccannnnnnngttgttgcacattttgtgctataattttttccgacgtattataggtggatgtg |
266 |
Q |
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| T |
2569616 |
aaattcgaacccattctgcatacccatttttagcgttccatttctttgttgttgcacattttgtgctataatttt-tccgacgtattataggtggatatg |
2569714 |
T |
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| Q |
267 |
tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt |
347 |
Q |
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| T |
2569715 |
tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt |
2569795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2569453 - 2569543
Alignment:
| Q |
1 |
cttttacaatttattgtactaatttgaattcactcttttatatttgtgcatatttcttaacaaactccaaaaagacataatgaatatttgcactg |
95 |
Q |
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| T |
2569453 |
cttttacaatttattgtactaatt---attcactcttttatatttgtgcat-tttcttaacaaactccaaaaagacataatgaatatttgcactg |
2569543 |
T |
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