View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20799_high_5 (Length: 236)
Name: NF20799_high_5
Description: NF20799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20799_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1300195 - 1299976
Alignment:
| Q |
1 |
ttgtttgaattgaatattttgccatttgtatccatgctttcgtttatatcctttatggnnnnnnnnnn--cttaggaaacgcggcgagtgataagacaat |
98 |
Q |
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| T |
1300195 |
ttgtttgaattgaatattttgccatttgtatccatgctttcgtttatatcttttatggaaaaaaaataatcttaggaaatgcggcgagtgataagacaat |
1300096 |
T |
|
| Q |
99 |
ttgtaagagttatatagtttgagatagggataacatgctcagccaaatatttttcagaaatcatagcatatttatgaaaaatttgtaagtgtaattagaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1300095 |
ttgtaagagttatatagtttgagatagggataacatgctcagccaaatatttttcagaaatcatagcatatttatgaataatttgtaagtgtaattagaa |
1299996 |
T |
|
| Q |
199 |
aaagcatagtgtatttatgaat |
220 |
Q |
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||||| ||||||||||||||| |
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| T |
1299995 |
aaagc--agtgtatttatgaat |
1299976 |
T |
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