View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20799_low_1 (Length: 482)
Name: NF20799_low_1
Description: NF20799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20799_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 44145722 - 44145278
Alignment:
| Q |
20 |
ttaaacaactctgcattttttattcctaggcaaaaaagtttaaccatcatatgctaagagcatctttaatccctttgaagttcaacaaattaaaagcatt |
119 |
Q |
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|||||||||||||||||||||||||| | || |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
44145722 |
ttaaacaactctgcattttttattcccatgctaaaa-gcttaaccatcgtatgctaagagcatctttaatccctttgaagttcaacaaattagaaacatt |
44145624 |
T |
|
| Q |
120 |
cccatttcattatggtttgttagcattgaaaatatgatggaaactactcttgatgcacataccttctcttcacttgagagacactaagagcaaagatgct |
219 |
Q |
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|||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||| |||||||| |
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| T |
44145623 |
cccatttcattatggtatgttggcattggaaacatgatggaaactactcttgatgcccataccatctcttctcctgagagacactaggagcgaagatgct |
44145524 |
T |
|
| Q |
220 |
cctgaatcatctggaagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatga |
319 |
Q |
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| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44145523 |
ctcgagtcatcctacagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatga |
44145424 |
T |
|
| Q |
320 |
atatcttcccgagtcctgaccgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaaatgtggctactccattactctacctgtacag |
419 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44145423 |
atatcttcccgagtcctgactgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaaatgtggctactccattactctacctgtacag |
44145324 |
T |
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| Q |
420 |
aggctgaaaattaatgttggtgtcggttgttttgaatgttgtactg |
465 |
Q |
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| T |
44145323 |
aggctgaaaattaatgttggtgttggttgttttgaatgttgtactg |
44145278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 44156250 - 44156610
Alignment:
| Q |
20 |
ttaaacaactctgcattttttattcctaggcaaaaaagtttaaccatcatatgctaagagcatctttaatccctttgaagttcaacaaattaaaagcatt |
119 |
Q |
| |
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|||||||||||||||||||||||||| | || |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
44156250 |
ttaaacaactctgcattttttattcccatgctaaaa-gcttaaccatcgtatgctaagagcatctttaatccctttgaagttcaacaaattagaaacatt |
44156348 |
T |
|
| Q |
120 |
cccatttcattatggtttgttagcattgaaaatatgatggaaactactcttgatgcacataccttctcttcacttgagagacactaagagcaaagatgct |
219 |
Q |
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|||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||| |||||||| |
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| T |
44156349 |
cccatttcattatggtatgttggcattggaaacatgatggaaactactcttgatgcccataccatctcttctcctgagagacactaggagcgaagatgct |
44156448 |
T |
|
| Q |
220 |
cctgaatcatctggaagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatga |
319 |
Q |
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| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44156449 |
ctcgagtcatcctacagaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacataa |
44156548 |
T |
|
| Q |
320 |
atatcttcccgagtcctgaccgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaa |
388 |
Q |
| |
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|||| ||||| |||| ||||||||||| |||||||| ||||||| |||||||||| ||||||| |
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| T |
44156549 |
atatattccc-------gaccaaattaatctagaaagaaaggttgtaaaattggaaacactttgtccaa |
44156610 |
T |
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