View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20799_low_4 (Length: 313)
Name: NF20799_low_4
Description: NF20799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20799_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 25524463 - 25524159
Alignment:
| Q |
1 |
gagaggttgaaacaacagagagatgatccccacgtttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttgtgtgtttgtttcgt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524463 |
gagagattgaaacaacagagagatgatccccacgtttaccttccattatttgcctcatgtgatgacaacattgatagcacgttttgtgtgtttgtttcgt |
25524364 |
T |
|
| Q |
101 |
tatgcaccctgctttgaagttaataatgctttttggtgccagtttagttatttgcattgttcccatgttgttttttctttggccttgtttacgattgttt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524363 |
tatgcaccctgctttgaagttgataatgctttttggtgccagtttagttatttacattgttcccatgttgttttttctttggccttgtttacgattgttt |
25524264 |
T |
|
| Q |
201 |
taagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtttagttgttttaaaatttgaaaggagtttgcaaaatttgaaacctgattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524263 |
taagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtttagttgttttaaaatttgaaaggagtttgcaaaatttgaaacctgattc |
25524164 |
T |
|
| Q |
301 |
ttctc |
305 |
Q |
| |
|
||||| |
|
|
| T |
25524163 |
ttctc |
25524159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 25525863 - 25525775
Alignment:
| Q |
1 |
gagaggttgaaacaacagagagatgatccccacgt---ttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttg |
86 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || ||||||||| |||||||| ||| ||||||| || | |||||||| |||||| |
|
|
| T |
25525863 |
gagaggttgaaacaatagagagatgatcctcatgtagtttaccttcctttatttgtttcacgtgaagagaagagtgatagcaggttttg |
25525775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 25520178 - 25520133
Alignment:
| Q |
172 |
tttttctttggccttgtttacgattgttttaagtttctgcatgttg |
217 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
25520178 |
tttttcttcggccttgtttatgcttgttttaattttctgcatgttg |
25520133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 25525701 - 25525657
Alignment:
| Q |
172 |
tttttctttggccttgtttacgattgttttaagtttctgcatgtt |
216 |
Q |
| |
|
|||||||||||||||||| | | |||||||| ||||||||||||| |
|
|
| T |
25525701 |
tttttctttggccttgttcatgcttgttttatgtttctgcatgtt |
25525657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26929996 - 26930088
Alignment:
| Q |
1 |
gagaggttgaaacaacagagagatgatccccacg----tttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttgtgt |
89 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | | |||||||| | |||||||||||||||||| ||| || | ||||| ||||||||| |
|
|
| T |
26929996 |
gagaggttaaaacaacagagagatgatccctaagttaatttaccttactttatttgtctcatgtgaacacatcagtagtagcaggttttgtgt |
26930088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University