View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_high_10 (Length: 347)
Name: NF2079_high_10
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 12529260 - 12529119
Alignment:
| Q |
1 |
tataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaaa |
100 |
Q |
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|||||||||||||| | | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
12529260 |
tataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaacaaa |
12529161 |
T |
|
| Q |
101 |
taaatattatgtaagatctttatggtaattacttgtcaaattgct |
145 |
Q |
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| T |
12529160 |
taaatattatgtaagatctttattg---ttacttgtcaaattgct |
12529119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 12529098 - 12528977
Alignment:
| Q |
203 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
302 |
Q |
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||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||| |||| |
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| T |
12529098 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggcacaagttagttgaaa--attat |
12529001 |
T |
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| Q |
303 |
accgtaaccccaaaccaaagcctt |
326 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
12529000 |
accgtaacttcaaaccaaagcctt |
12528977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 44668454 - 44668557
Alignment:
| Q |
39 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaaataaatattatgtaagatctttatggtaattacttgtca |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
44668454 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaccaaataaatattatgtaagatctttattg---ttacttgtca |
44668550 |
T |
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| Q |
139 |
aattgct |
145 |
Q |
| |
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||||||| |
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| T |
44668551 |
aattgct |
44668557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 203 - 326
Target Start/End: Original strand, 44668578 - 44668699
Alignment:
| Q |
203 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
302 |
Q |
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||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| |||| |
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| T |
44668578 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggtacaagttagttgaaa--attat |
44668675 |
T |
|
| Q |
303 |
accgtaaccccaaaccaaagcctt |
326 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
44668676 |
accgttaccccaaaccaaagcctt |
44668699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44668385 - 44668438
Alignment:
| Q |
1 |
tataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataatt |
54 |
Q |
| |
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|||||||||||||| | | | |||||||||| ||||||||||||||||||||| |
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| T |
44668385 |
tataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataatt |
44668438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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