View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2079_high_12 (Length: 314)
Name: NF2079_high_12
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_high_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 25713341 - 25713042
Alignment:
| Q |
15 |
aatgccatactaaattaaaattttactcttaaaagaaactaaattaaaatttaatgagatattttctagggtcccaaattttaaggtataaaactctaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25713341 |
aatgccatactaaattaaaattttactcttaaaagaaactaaattaaaatttaatgagatattttctagggtcccaaattttaaggtataaaactctaac |
25713242 |
T |
|
| Q |
115 |
ttggaacgcttggcccttgtgttgaatctggattttccgtcgaaaattaaacaccattagaatgatgatgaaaacttcatacatatgattnnnnnnngat |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25713241 |
ttggaacgcttggcccttgggttgaatctgaattttccgtcgaaaattaaacaccattagaatgatgatgaaaacttcatacatatgattaaaaaaagat |
25713142 |
T |
|
| Q |
215 |
taattttaatatatttgatgaaaaaggttaggttctttcaaatatgacgacttatttcgttgttcctaatattaactctatgataatagtgtcatatttc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25713141 |
taattttaatatatttgatgaaaaaggttaggttctttcaaatatgacgacttatttcgttgttcctaatattaactctatgataatagtgtcatctttc |
25713042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University