View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_high_13 (Length: 299)
Name: NF2079_high_13
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 32722570 - 32722678
Alignment:
| Q |
177 |
tgagttacatatttaccattttgtattgtgagttactagattgttgaaattcatccttctatggttgtatttttctgttgttgtgaacgtcctctaacac |
276 |
Q |
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| T |
32722570 |
tgagttacatatttaccattttgtattgtgagttactagattgttgaaattcatccttctatggttgtatttttctgttgttgtgaacgtcctctaacac |
32722669 |
T |
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| Q |
277 |
atgatagat |
285 |
Q |
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| T |
32722670 |
atgatagat |
32722678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 15719313 - 15719417
Alignment:
| Q |
181 |
ttacatatttaccattttgtattgtgagttactagattgttgaaattcatccttctatggttgtatttttctgttgttgtgaacgtcctctaacacatga |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |
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| T |
15719313 |
ttacatatttaccattttgtattgtgagttactagattgttgaaattcatccttctatggttgtatttttctatttctgtgaacgtcctcttacacatga |
15719412 |
T |
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| Q |
281 |
tagat |
285 |
Q |
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||||| |
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| T |
15719413 |
tagat |
15719417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15719197 - 15719269
Alignment:
| Q |
1 |
ttcttcccattttctgtagagtgagagtgtgataaaaaatgaaattatgaacatgtcttaacagtttggtaatg |
74 |
Q |
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|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
15719197 |
ttcttccccttttttggagagtgagagtgtgataaaaaatgaaattatgaacatgtctt-atagtttggtaatg |
15719269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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