View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_high_9 (Length: 354)
Name: NF2079_high_9
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 47333354 - 47333032
Alignment:
| Q |
8 |
ccaataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttca |
107 |
Q |
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| T |
47333354 |
ccaataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccatactttca |
47333255 |
T |
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| Q |
108 |
taggtgaactttgttcatgcccttcaactgattctgacaaaatcggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333254 |
taggtgaactttgttcatgcccttcaactgattctgacaaaaccggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatc |
47333155 |
T |
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| Q |
208 |
accaggtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaatca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333154 |
accaggtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaatca |
47333055 |
T |
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| Q |
308 |
ccgtatttgattaaccatggttc |
330 |
Q |
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||||||||||||||||||||||| |
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| T |
47333054 |
ccgtatttgattaaccatggttc |
47333032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 47301763 - 47301704
Alignment:
| Q |
43 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
102 |
Q |
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| T |
47301763 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattccaaac |
47301704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 17841900 - 17841841
Alignment:
| Q |
43 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
102 |
Q |
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|||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
17841900 |
aggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaattccaaac |
17841841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 653540 - 653632
Alignment:
| Q |
18 |
ccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcatag |
110 |
Q |
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| T |
653540 |
ccaaactaggtgcaccaatagcacaaggattaaccatagggttatcaatcccaccctttgcattagggtacacaaagttccacactttaatag |
653632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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