View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_low_11 (Length: 323)
Name: NF2079_low_11
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_low_11 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 24422073 - 24422347
Alignment:
| Q |
19 |
aacgctgaatgagttatttttgagagatatgaacaacaaatatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttag |
118 |
Q |
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| T |
24422073 |
aacgctgaatgagttatttttgagagatatgaacaacaaatatttgtgaaaacgcgtcaaagaaggtgtatttcaaattagtatatcctttgtcttttag |
24422172 |
T |
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| Q |
119 |
atagaagaattggcaagcatgattgagagcccaagtgtgaaacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatgga |
218 |
Q |
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| T |
24422173 |
atagaagaattggcaagcatgattgagagcccaagtgtgaaacatatgataaagtcaaattaattccaaatttgccagaattctctaatgttcaaatgga |
24422272 |
T |
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| Q |
219 |
ataaaatatatgtaaaagaagtaagtagtacatttaatccaaatttggactaaatacatatacagttttgcttat |
293 |
Q |
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| T |
24422273 |
ataaaatatatgtaaaagaagtaagtagtacatttaatccaaatttggactaaatacatatacaaatttgcttat |
24422347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 50 - 308
Target Start/End: Complemental strand, 24469668 - 24469414
Alignment:
| Q |
50 |
aacaacaaatatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcc |
149 |
Q |
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| T |
24469668 |
aacaacaaaaatatgtgagaacgcgttcgtgcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaact |
24469569 |
T |
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| Q |
150 |
caagtgtgaaacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtac |
249 |
Q |
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| T |
24469568 |
caagtgtgaaacatttgataaagtcaaattaatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgc |
24469473 |
T |
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| Q |
250 |
atttaatccaaatttggactaaatacatatacagttttgcttatgatacatgtaatatg |
308 |
Q |
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| T |
24469472 |
atttaatcaaaatttggactaaatacatatacagttttgcttatgatacatgtaatatg |
24469414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 24406887 - 24406959
Alignment:
| Q |
124 |
agaattggcaagcatgattgagagcc-caagtgtgaaacttatgataaagtcaaattaattccaaatttgcca |
195 |
Q |
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| T |
24406887 |
agaactggcaagcatgattgagaacatcaagtgtgaaacaattgataaagtcaaattaattcaaaacttgcca |
24406959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 50 - 308
Target Start/End: Complemental strand, 3928 - 3674
Alignment:
| Q |
50 |
aacaacaaatatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcc |
149 |
Q |
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| T |
3928 |
aacaacaaaaatatgtgagaacgcgttcgtgcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaact |
3829 |
T |
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| Q |
150 |
caagtgtgaaacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtac |
249 |
Q |
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| T |
3828 |
caagtgtgaaacatttgataaagtcaaattaatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgc |
3733 |
T |
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| Q |
250 |
atttaatccaaatttggactaaatacatatacagttttgcttatgatacatgtaatatg |
308 |
Q |
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| T |
3732 |
atttaatcaaaatttggactaaatacatatacagttttgcttatgatacatgtaatatg |
3674 |
T |
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