View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_low_12 (Length: 316)
Name: NF2079_low_12
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 41500712 - 41500422
Alignment:
| Q |
19 |
aagtgttaaactggtttaaacaatttgtttgcaggagatgtccatggccagttttcagaccttttaaggctgttcgaatacgggggatacccacctgagg |
118 |
Q |
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| T |
41500712 |
aagtgttaaactggtttaaacaatttgtttgcaggagatgtccatggccagttttcagaccttttaaggctgttcgaatacgggggatacccacctgagg |
41500613 |
T |
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| Q |
119 |
caaattacttatttcttggagattatgttgatcgtggtaagcagagcatagagacaatatgcttgctccttgcatataaaatcaaatacaaggagaactt |
218 |
Q |
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| T |
41500612 |
caaattacttatttcttggagattatgttgatcgtggtaagcagagcatagagacaatatgcttgctccttgcatataaaatcaaatacaaggagaactt |
41500513 |
T |
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| Q |
219 |
ctttcttctcagaggcaaccatgaatgcgcctccatcaatcgtatttatggtttctacgatgagtgcaagaggaggtacaatgttcatctc |
309 |
Q |
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| T |
41500512 |
ctttcttctcaggggcaaccatgaatgcgcctccatcaatcgtatttatggtttctacgatgagtgcaagaggaggtacaatgttcgtctc |
41500422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 4464 - 4365
Alignment:
| Q |
191 |
catataaaatcaaatacaaggagaacttctttcttctcagaggcaaccatgaatgcgcctccatcaatcgtatttatggtttctacgatgagtgcaagag |
290 |
Q |
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| T |
4464 |
catataagatcaaatacccggagaattttttccttcttagaggaaaccatgaatgtgcatctattaacagaatttatggtttttatgatgagtgcaagag |
4365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 48002162 - 48002333
Alignment:
| Q |
124 |
tacttatttcttggagattatgttgatcgtggtaagcagagcatagagacaatatgcttgctccttgcatataaaatcaaatacaaggagaacttctttc |
223 |
Q |
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||||||||| | || |||||||||||||| || |||||||| |||| ||||| ||| | |||||||| ||||| || ||||| || ||||| || | |
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| T |
48002162 |
tacttatttttgggggattatgttgatcgagggaagcagagtttagaaacaatttgccttctccttgcttataagattaaatatcctgacaactttttcc |
48002261 |
T |
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| Q |
224 |
ttctcagaggcaaccatgaatgcgcctccatcaatcgtatttatggtttctacgatgagtgcaagaggaggt |
295 |
Q |
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| T |
48002262 |
tattgcgaggaaatcatgaatgtgcttccataaatcggatttatggtttttacgatgagtgcaagagaaggt |
48002333 |
T |
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