View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_low_18 (Length: 242)
Name: NF2079_low_18
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33702616 - 33702395
Alignment:
| Q |
1 |
agctttacgttttttactaaaaggaaagagaaattaacataataaatagcatactactatttgttattnnnnnnnntatatagcatccaccaactaaact |
100 |
Q |
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| T |
33702616 |
agcttgacgttttttactaaaaggaaagagaaatgaacataataaataacata--ac-atttgttattaaaaaaaatatatagcgtccaccaactaaact |
33702520 |
T |
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| Q |
101 |
tacatcatctattatagagtaataataatatttgttgaggctaagggaactcgtgggtttgtttcccacatactgttaatattccattccaactcaacta |
200 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
33702519 |
tacatcatctatcatagagtaaaaataatatttgttgaggctaagggaactcgtaggtttgtttcgcacataatgttaatattccattccaactcaacta |
33702420 |
T |
|
| Q |
201 |
tacttcgcagttcacattacctttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
33702419 |
tacttcgcagttcacattacctttt |
33702395 |
T |
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