View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_low_2 (Length: 461)
Name: NF2079_low_2
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 13875304 - 13874955
Alignment:
| Q |
1 |
ctttgactttgtatggtgaaacttgttccttgattcttcctttgaaatgggtttttgtagcttgaagtgaatggaatctatggatcttgaagtttcacgt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13875304 |
ctttgattttgtatggtgaaacttgttccttgattcttcctttgaaatgggtttttgtagcttgaagtgaatggaatctatggatcttgaagtttcacgt |
13875205 |
T |
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| Q |
101 |
ttgtgcttcattgcttcttctaatacctggttttgaaaattgaaaattnnnnnnntgatacttttattgtaagataggtttgaattagagaaagagagtt |
200 |
Q |
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| T |
13875204 |
ttgtgcttcattgcttcttctaatacctggttttgaaaattgaaaattaaaaaaatgatatttttattgtaagataggtttgaattagagaaagagagtt |
13875105 |
T |
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| Q |
201 |
aaagggtacctgaaaatagttgatttgtgggtcaaaaccatggtcactgaaatgctgagggtctgatatgggaaaaattggagtcttgtttgacattttt |
300 |
Q |
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| T |
13875104 |
aaagggtacctgaaaatagttgatttgtgggtcaaaaccatagtcactgaaatgctgagggtctgatatgggaaaaattggagtcttgtttgacattttt |
13875005 |
T |
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| Q |
301 |
tgttgttctattttctgttggttgggagttgctaggaagaagagtagaat |
350 |
Q |
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| T |
13875004 |
tgttgttctattttctgttggttgggagttgctaggaagaagagtagaat |
13874955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 14015429 - 14015080
Alignment:
| Q |
1 |
ctttgactttgtatggtgaaacttgttccttgattcttcctttgaaatgggtttttgtagcttgaagtgaatggaatctatggatcttgaagtttcacgt |
100 |
Q |
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| T |
14015429 |
ctttgattttgtatggtgaaacttgttccttgattcttcctttgaaatgggtttttgtagcttgaagtgaatggaatctatggatcttgaagtttcacgt |
14015330 |
T |
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| Q |
101 |
ttgtgcttcattgcttcttctaatacctggttttgaaaattgaaaattnnnnnnntgatacttttattgtaagataggtttgaattagagaaagagagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14015329 |
ttgtgcttcattgcttcttctaatacctggttttgaaaattgaaaattaaaaaaatgatatttttattgtaagataggtttgaattagagaaagagagtt |
14015230 |
T |
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| Q |
201 |
aaagggtacctgaaaatagttgatttgtgggtcaaaaccatggtcactgaaatgctgagggtctgatatgggaaaaattggagtcttgtttgacattttt |
300 |
Q |
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| T |
14015229 |
aaagggtacctgaaaatagttgatttgtgggtcaaaaccatagtcactgaaatgctgagggtctgatatgggaaaaattggagtcttgtttgacattttt |
14015130 |
T |
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| Q |
301 |
tgttgttctattttctgttggttgggagttgctaggaagaagagtagaat |
350 |
Q |
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| T |
14015129 |
tgttgttctattttctgttggttgggagttgctaggaagaagagtagaat |
14015080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 13874908 - 13874820
Alignment:
| Q |
373 |
tttggaatttggaggctcaagatgtgtgaagtgagagttggtaaaagagtggtgaagtaaatgcgttcacatttcttggtgtcttacat |
461 |
Q |
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||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13874908 |
tttggaatttggaggttcaagatttgtgaagggagagttggtaaaagagtggtgaagtaaatgcgttcacatttcttggtgtcttacat |
13874820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 14015033 - 14014945
Alignment:
| Q |
373 |
tttggaatttggaggctcaagatgtgtgaagtgagagttggtaaaagagtggtgaagtaaatgcgttcacatttcttggtgtcttacat |
461 |
Q |
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| T |
14015033 |
tttggaatttggaggttcaagatttgtgaagggagagttggtaaaagagtggtgaagtaaatgcgttcacatttcttggtgtcttacat |
14014945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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