View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_low_20 (Length: 201)
Name: NF2079_low_20
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 18842369 - 18842529
Alignment:
| Q |
16 |
atctacaaaatgcatcacaatctttttaatgtaattttggtttagcttataaaagtaaacattctgtataacataaatgctttttgtatgggaaaaaggg |
115 |
Q |
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| T |
18842369 |
atctacaaaaggcatcacaatctttttaatgtaattttggtttagcttataaaagcaagcattctgtataacataaatgctttttgtgtggg-aaaaggg |
18842467 |
T |
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| Q |
116 |
aagagtttctacaagttctccataacataagccaagatacaaataaactcaaattaataatt |
177 |
Q |
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| T |
18842468 |
aagagtttttacaagttctccataacataagccaagatacaaataaactcaaattaataatt |
18842529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 18853425 - 18853542
Alignment:
| Q |
60 |
gcttataaaagtaaacattctgtataacataaatgctttttgtatgggaaaaagggaagagtttctacaagttctccataacataagccaagatacaaat |
159 |
Q |
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| T |
18853425 |
gcttataaaagcaaacattctgtataacataaatgctttttgtatgggaaaaagggaagagtttctacaagttctccataacataagccaagatacaaat |
18853524 |
T |
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| Q |
160 |
aaactcaaattaataatt |
177 |
Q |
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| T |
18853525 |
aaactcaaattaataatt |
18853542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 50014762 - 50014832
Alignment:
| Q |
90 |
aaatgctttttgtatgggaaaaagggaagagtttctacaagttctccataacataagccaagatacaaataa |
161 |
Q |
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| T |
50014762 |
aaatgctttttttatgggaaaaagggaagagtttttacaa-acctccataacataagccaggatacaaataa |
50014832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 50014677 - 50014735
Alignment:
| Q |
26 |
tgcatcacaatctttttaatgtaattttggtttagcttataaaagtaaacattctgtat |
84 |
Q |
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| T |
50014677 |
tgcatcacaatctttttattgtaattttggtttagcttataaaagcaagcattcagtat |
50014735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 44111749 - 44111807
Alignment:
| Q |
26 |
tgcatcacaatctttttaatgtaattttggtttagcttataaaagtaaacattctgtat |
84 |
Q |
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| T |
44111749 |
tgcatcacaatctttttattgtaattttggtttagcttataaaagcaagcattctgtat |
44111807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 44111834 - 44111904
Alignment:
| Q |
90 |
aaatgctttttgtatgggaaaaagggaagagtttctacaagttctccataacataagccaagatacaaataa |
161 |
Q |
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| T |
44111834 |
aaatgctttttttatgggaaaaagggaagagtttttacaa-acctccataacataagccaggatacaaataa |
44111904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 51300813 - 51300887
Alignment:
| Q |
90 |
aaatgctttttgtatgggaaaaagggaagagtttctacaagttctccataacataagccaagatacaaataaact |
164 |
Q |
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| T |
51300813 |
aaatgctttatttatacgaaaaaaggaagagtttttacaaatcctccataacataagccaagatacaaataaact |
51300887 |
T |
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