View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2079_low_5 (Length: 401)
Name: NF2079_low_5
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2079_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 130 - 370
Target Start/End: Original strand, 19507182 - 19507422
Alignment:
| Q |
130 |
tgtatgtggtagttacaactgtcaaccgtccgatcgaaataagcagccgagatcgtattatgcggtaaaatgagctgaaatctgaaccattcgatcttaa |
229 |
Q |
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| T |
19507182 |
tgtatgtggtagttacaactgccaaccgtccgatcgaaataaacagccgagatcgtattatgcggtaaaatgagttgaaatctgaaccattcgatcttaa |
19507281 |
T |
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| Q |
230 |
atcaacacttgagataagctgcaacatgggaccgcatgaaaacactacagcagcagatccggatcccaatccaagttcatatttagtattgtactagata |
329 |
Q |
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| T |
19507282 |
atcaacacttgagataagttacaacatgggaccgcatgaaaacactacagcagcagatccaggtcccaatccaagtccatatttagtattgtactaaata |
19507381 |
T |
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| Q |
330 |
aactagaaaacttacaagtcattttagtaaatctataaatg |
370 |
Q |
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| T |
19507382 |
aactagaaaacttacaagtcattttagtaaatccataaatg |
19507422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 19507047 - 19507153
Alignment:
| Q |
25 |
acttgttggtattcgactaaaactaaaacaagttgatacaaatttgtgtatcataacacgtgtatggtcccct-nnnnnnnncacctgaatgcacatatt |
123 |
Q |
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| T |
19507047 |
acttgttggtattcgactaaaactaaaacaagtagatacaaatttgtgtatcataacacatgtatggtcccctaaaaaaaaacacctgaatgcacatatt |
19507146 |
T |
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| Q |
124 |
accaact |
130 |
Q |
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| T |
19507147 |
accaact |
19507153 |
T |
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