View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2079_low_6 (Length: 375)

Name: NF2079_low_6
Description: NF2079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2079_low_6
NF2079_low_6
[»] chr4 (5 HSPs)
chr4 (1-360)||(18852909-18853268)
chr4 (106-360)||(50014090-50014341)
chr4 (106-360)||(18841850-18842100)
chr4 (1-109)||(50014380-50014489)
chr4 (4-51)||(18842173-18842220)
[»] chr8 (2 HSPs)
chr8 (106-360)||(44111162-44111413)
chr8 (1-109)||(44111452-44111561)
[»] chr1 (3 HSPs)
chr1 (144-360)||(51299074-51299289)
chr1 (4-103)||(51300435-51300535)
chr1 (106-152)||(51300344-51300390)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 18853268 - 18852909
Alignment:
Q  1 atcatattcgttttatccacaaatttgaagtattgaaaacatatattaaataaaatttagaatggaggaataaggtatcagcagatgataatttcttttg 100  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18853268 atcatattcgttttatccacaaatttgaattattggaaacatatattaaataaaatttagaatggaggaataaggtatcagcagatgataatttcttttg 18853169  T
Q  101 gtgatttgatatttgcagtcttacttatttcaggaaaagatatatgttgaaatgggaaggtggaaatgatagtagatttttcttgatatagatcttttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  18853168 gtgatttgatatttgcagtcttacttatttcaggaaaagatatatgttgaaattggaaggtggaaatgatagtagatttttcttgatatagattttttgt 18853069  T
Q  201 ggacgtggttttacataaagaaaaccataaaaattgaatcaaataatattgtggcaaattttgaagttgatttttattgcaggtttttcttgaaattaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18853068 ggacgtggttttacataaagaaaaccataaaaattgaatcaaataatattgtggcaaattttgaagttgatttttattgcaggtttttcttgaaattaag 18852969  T
Q  301 ggagtggaattaccaaacccttttcccaggcttacatatgctgaagcaatgaatagatat 360  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18852968 ggcgtggaattaccaaacccttttcccaggcttacatatgctgaagcaatgaatagatat 18852909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 106 - 360
Target Start/End: Complemental strand, 50014341 - 50014090
Alignment:
Q  106 ttgatatttgcagtcttacttatttcaggaaaagatatatgttgaaatgggaaggtggaaatgatagtagatttttcttgatatagatcttttgtggacg 205  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||  |||| | |||||||||  |||||||||||||||||||||||    
T  50014341 ttgatatttgcagtctcacttatttcaagaaaagatatatgttgaaatgggaaggtgttaatgtttgtagattttgtttgatatagatcttttgtggacg 50014242  T
Q  206 tggttttacataaagaaaaccataaaaattgaatcaaataatattgtggcaaattttgaagttgatttttattgcaggtttttcttgaaattaagggagt 305  Q
    |||||| ||||||||||||||||||||||   ||||  || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  50014241 tggtttcacataaagaaaaccataaaaatc--atcatgta-tattatggctaattttgaagttggtttttattgcaggtttttcttgaaattaagggcgt 50014145  T
Q  306 ggaattaccaaacccttttcccaggcttacatatgctgaagcaatgaatagatat 360  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50014144 ggaattaccaaaccctttccccaggcttacatatgctgaagcaatgaatagatat 50014090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 106 - 360
Target Start/End: Complemental strand, 18842100 - 18841850
Alignment:
Q  106 ttgatatttgcagtcttacttatttcaggaaaagatatatgttgaaatgggaaggtggaaatgatagtagatttttcttgatatagatcttttgtggacg 205  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |   |||   ||| ||||   |||||||||||||| |||||||     
T  18842100 ttgatatttgcagtctcacttatttcaggaaaagatataagttgaaatgggaaggggttgatgtctgtatatttagtttgatatagatcttctgtggaca 18842001  T
Q  206 tggttttacataaagaaaaccataaaaattgaatcaaata---atattgtggcaaattttgaagttgatttttattgcaggtttttcttgaaattaaggg 302  Q
    ||||||||||||||||||||||||||||| ||||||   |   ||||| |||| |||||||    | |||||    | ||||||||||||||||||||||    
T  18842000 tggttttacataaagaaaaccataaaaatcgaatcatgcatgtatattatggctaattttgc---taatttt----gtaggtttttcttgaaattaaggg 18841908  T
Q  303 agtggaattaccaaacccttttcccaggcttacatatgctgaagcaatgaatagatat 360  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18841907 cgtggaattaccaaaccctttccccaggcttacatatgctgaagcaatgaatagatat 18841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 50014489 - 50014380
Alignment:
Q  1 atcatattcgttttatccacaaatttgaagtattgaaaacatatattaaataaaa-tttagaatggaggaataaggtatcagcagatgataatttctttt 99  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  50014489 atcatattcattttatccacaattttgaagtaatggaaacatatattaaataaaaatttagaatggaggaacaaggtatcaacagatgataacttctttt 50014390  T
Q  100 ggtgatttga 109  Q
    ||||||||||    
T  50014389 ggtgatttga 50014380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 18842220 - 18842173
Alignment:
Q  4 atattcgttttatccacaaatttgaagtattgaaaacatatattaaat 51  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  18842220 atattagttttatccacaaatttgaattattggaaacatatattaaat 18842173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 106 - 360
Target Start/End: Complemental strand, 44111413 - 44111162
Alignment:
Q  106 ttgatatttgcagtcttacttatttcaggaaaagatatatgttgaaatgggaaggtggaaatgatagtagatttttcttgatatagatcttttgtggacg 205  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||  |||| | |||||||||  |||||||||||||||||||||||    
T  44111413 ttgatatttgcagtctcacttatttcaagaaaagatatatgttgaaatgggaaggtgttaatgtttgtagattttgtttgatatagatcttttgtggacg 44111314  T
Q  206 tggttttacataaagaaaaccataaaaattgaatcaaataatattgtggcaaattttgaagttgatttttattgcaggtttttcttgaaattaagggagt 305  Q
    |||||| ||||||||||||||||||||||   ||||  || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  44111313 tggtttcacataaagaaaaccataaaaatc--atcatgta-tattatggctaattttgaagttggtttttattgcaggtttttcttgaaattaagggcgt 44111217  T
Q  306 ggaattaccaaacccttttcccaggcttacatatgctgaagcaatgaatagatat 360  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44111216 ggaattaccaaaccctttccccaggcttacatatgctgaagcaatgaatagatat 44111162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 44111561 - 44111452
Alignment:
Q  1 atcatattcgttttatccacaaatttgaagtattgaaaacatatattaaataaaa-tttagaatggaggaataaggtatcagcagatgataatttctttt 99  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  44111561 atcatattcattttatccacaattttgaagtaatggaaacatatattaaataaaaatttagaatggaggaacaaggtatcaacagatgataacttctttt 44111462  T
Q  100 ggtgatttga 109  Q
    ||||||||||    
T  44111461 ggtgatttga 44111452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 144 - 360
Target Start/End: Complemental strand, 51299289 - 51299074
Alignment:
Q  144 atgttgaaatgggaaggtggaaatgatagtagatttttcttgatatagatcttttgtggacgtggttttacataaagaaaaccataaaaattgaatcaaa 243  Q
    |||||||||||||||||||  |||| | |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  51299289 atgttgaaatgggaaggtgttaatgcttgtagattttgtttgatatagatcttttgtggacgtggttttacataaagaaaaccataaaaatcgaatcatg 51299190  T
Q  244 taatattgtggcaaattttgaagttgatttttattgcaggtttttcttgaaattaagggagtggaattaccaaacccttttcccaggcttacatatgctg 343  Q
    || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||    
T  51299189 ta-tattatggctaattttgaagttggtttttattgcaggtttttcttgaaattaagggtgtggaattaccaaatcctttccctaggcttacatatgctg 51299091  T
Q  344 aagcaatgaatagatat 360  Q
    |||||||||||||||||    
T  51299090 aagcaatgaatagatat 51299074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 51300535 - 51300435
Alignment:
Q  4 atattcgttttatccacaaatttgaagtattgaaaacatatattaaataaaa-tttagaatggaggaataaggtatcagcagatgataatttcttttggt 102  Q
    |||||| |||||||||||  ||||||||| || || |||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  51300535 atattcattttatccacacttttgaagtaatggaagcatatattaaataaaaatttagaatggaggaacaaggtatcaacagatgataacttcttttggt 51300436  T
Q  103 g 103  Q
    |    
T  51300435 g 51300435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 51300390 - 51300344
Alignment:
Q  106 ttgatatttgcagtcttacttatttcaggaaaagatatatgttgaaa 152  Q
    ||||||||||||| || |||||| ||||||||||||||| |||||||    
T  51300390 ttgatatttgcagcctcacttatctcaggaaaagatatacgttgaaa 51300344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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