View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20800_high_4 (Length: 328)
Name: NF20800_high_4
Description: NF20800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20800_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 16578856 - 16578598
Alignment:
| Q |
19 |
ctacaacagctcctggtgctgctggttgtctaagggtaacatttgcaactgatccactaccgcttagaacacaaaccccgcgttgtcgccttcttgcaaa |
118 |
Q |
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| T |
16578856 |
ctacaacagctcctggtgctgcaggttgtctaagggtaacatttgcaactgatccactaccgcttagaacacaaaccccgcgttgtcgccttcttgcaaa |
16578757 |
T |
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| Q |
119 |
ctgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatttggactgtctcttgttacgaagattggtggtttt |
218 |
Q |
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| T |
16578756 |
ctgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatttggactgtctcttgttacgaagattggtggtttt |
16578657 |
T |
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| Q |
219 |
ggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc |
277 |
Q |
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| T |
16578656 |
ggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgc |
16578598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 42 - 277
Target Start/End: Original strand, 32803062 - 32803297
Alignment:
| Q |
42 |
ggttgtctaagggtaacatttgcaactgatccactaccgcttagaacacaaaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacat |
141 |
Q |
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| T |
32803062 |
ggttgtctaagagtaacattagctacagagccacttccactgagaacacaaacaccgcgttgacgcctccttgcgaattgtgctacactttctgctatat |
32803161 |
T |
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| Q |
142 |
ctgctccggaggatacttccatcacatggcttttcagtgaatttggactgtctcttgttacgaagattggtggttttggtttgttttttgaaccgggtgg |
241 |
Q |
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| T |
32803162 |
cagctccaccggctacctccatgacatggctcttcaaagcatttgggctatctcttgttacaaagataggtggttttggtctgtttttggatccaggtgg |
32803261 |
T |
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| Q |
242 |
tcttcctcttggtcttcggtttccaatttcaactgc |
277 |
Q |
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| T |
32803262 |
tcttcctcttggtcttcggttaccaacttcgactgc |
32803297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 35465529 - 35465572
Alignment:
| Q |
192 |
tctcttgttacgaagattggtggttttggtttgttttttgaacc |
235 |
Q |
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| T |
35465529 |
tctcttgttatgaatattggtggttttggtttgttttttgaacc |
35465572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 32809703 - 32809752
Alignment:
| Q |
223 |
tgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttca |
272 |
Q |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttca |
32809752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 13212844 - 13212892
Alignment:
| Q |
210 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
258 |
Q |
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| T |
13212844 |
ggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
13212892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 3332386 - 3332434
Alignment:
| Q |
210 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
258 |
Q |
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| T |
3332386 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
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