View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20800_low_1 (Length: 754)
Name: NF20800_low_1
Description: NF20800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20800_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 395 - 735
Target Start/End: Original strand, 7976882 - 7977228
Alignment:
| Q |
395 |
atatctacaaatcaa---gggaaaccgtcatgcctggattagtacagtaaatc---gagtcgtacatcgtgacgaaatccctaaatcatttaccccaact |
488 |
Q |
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| T |
7976882 |
atatctacaaatcaacaagggaaaccgtcatgcctggattagtacagtaaatcatcgagtcctacatcgtgacaaaatccctaaatcatttaccccaact |
7976981 |
T |
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| Q |
489 |
ttgtatttacaaaatgtatttatttacatttgcataagatacataatcgagttgaaactattaggtgtaaatacaaatagaaaataaagacatggagttt |
588 |
Q |
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| T |
7976982 |
ttgtatttacaaaatgtatttatttacatttgcataagatacataattgagttgaaacaattaggtgtaaatgcaaatagaaaataaagacatggagttt |
7977081 |
T |
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| Q |
589 |
ttgaaaaatggtaccctttatttgattcattatgtcaatattgtttcataaaaagtatatttgtcaagtatgacacaagaatcttatccaagtaatataa |
688 |
Q |
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| T |
7977082 |
ttgaaacatggtaccctttatttgattcattatgtcaatattgtttcataaaaagtatatttgtcaagtatgacacaagaatcttatccaagtaatataa |
7977181 |
T |
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| Q |
689 |
ctcaaggcaaaataatgatgaacaatacaatttaaaactgcatataa |
735 |
Q |
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| T |
7977182 |
ctcaaggcaaaataatgatgaataatacaatttaaaactgcatataa |
7977228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 245 - 331
Target Start/End: Original strand, 7976773 - 7976859
Alignment:
| Q |
245 |
aaaagaggaaacatctgtgaatctagaaatatgaagatcatggatgtactgatctggaaaaataccatgtcagttctaaactaaacc |
331 |
Q |
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| T |
7976773 |
aaaagaagaaacattcgtgaatctggaaatataaagatcatagatgtactaatctggaaaaatacaatgtcagttctaaactaaacc |
7976859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 612
Target Start/End: Original strand, 658931 - 659104
Alignment:
| Q |
436 |
cagtaaatcgagtcgtacatcgtgacgaaatccctaaatcatttaccccaactttgtatttacaaaatgtatttatttacatttgcataagatacataat |
535 |
Q |
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| T |
658931 |
cagtaaatcaatttgtacatcgtgactaaatctataaattatgaaacccaacattgtatttacaaattgtatttctatgcata---ataagatacataat |
659027 |
T |
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| Q |
536 |
cgagttgaaactattaggtgtaaatacaaatagaaaataaagacatggagtttttgaaaaatggtaccctttatttg |
612 |
Q |
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| T |
659028 |
caagttcaaactattggctctaaatgaaaataaaaaatagagacatggagtttttgcaacatgacaccctttatttg |
659104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 699
Target Start/End: Complemental strand, 8184487 - 8184442
Alignment:
| Q |
654 |
aagtatgacacaagaatcttatccaagtaatataactcaaggcaaa |
699 |
Q |
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| T |
8184487 |
aagtatgacacaagaatcttatacatgtaatataaatcaaggcaaa |
8184442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 51992745 - 51992798
Alignment:
| Q |
232 |
tctaaaataaaacaaaagaggaaacatctgtgaatctagaaatatgaagatcat |
285 |
Q |
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| T |
51992745 |
tctaaaataaaacaaaaacgaaagcatccgtgaatctggaaatatgaagatcat |
51992798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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