View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20800_low_2 (Length: 524)
Name: NF20800_low_2
Description: NF20800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20800_low_2 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Original strand, 8659 - 9158
Alignment:
| Q |
11 |
cagagaccagaaattatcaaatgaaaatcaacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttga |
110 |
Q |
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| T |
8659 |
cagagaccagaaattatcaaatgaaaatcaacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttga |
8758 |
T |
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| Q |
111 |
tatatctagcaatatataaacatacatggttggtggtctatatgtttttcaaacaaaaatggagaaagaaa-taagattatgcaaagaaacacatacttt |
209 |
Q |
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| T |
8759 |
tatatctagcaatatataaacatacatggttggtggtctatatgtttttcaaacaaaaatggagaaagaaaataagattatgcaaagaaacacatacttt |
8858 |
T |
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| Q |
210 |
gaattgattgcatagtaagttcactcccttgtaaacttaaactcttgagggaagaaagtctactaagaggagatgcaatatcagtgtctttgaagttgtt |
309 |
Q |
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| T |
8859 |
gaattgattgcatagtaagttcactcccttgtaaacttaaactcttgagggaagaaagtctactaagaggagatgcaatatcagtgtctttgaagttgtt |
8958 |
T |
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| Q |
310 |
gtttgaaaggtcaaggatctcaaggttcttcaatatagcgcacaatcctacatgttaaattaatatattgtgttaccgacttactggtatgcaacaatca |
409 |
Q |
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| T |
8959 |
gtttgaaaggtcaaggatctcaaggttcttcaatatagcgcacaatcctacatgttaaattaatatattgtgttaccgacttactggtatgcaacaatca |
9058 |
T |
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| Q |
410 |
atcaacattaattcctccgataaaagaaaatggaaagtgttaattaccttgaaaatgaagatccgagtccaatccaatgccatccaaaactagttccttc |
509 |
Q |
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| T |
9059 |
atcaacattaattcctccgataaaagaaaatggaaagtgttaattaccttgaaaatgaagatccgagtccaatccaatgccatccaaaactagttccttc |
9158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 24260378 - 24260754
Alignment:
| Q |
12 |
agagaccagaaattatcaaatgaaaat-caacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttga |
110 |
Q |
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| T |
24260378 |
agagaccagaaattatcaaatgagatgacaacaaacctagggtccataagttcatattgtttgaagataagtcaaggatctccaaagacctcagttttga |
24260477 |
T |
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| Q |
111 |
tatatctagcaatatat----aaacatacatggttggtggtctatatgtttttcaaacaaaaatggagaaagaaataagatta----------tgcaaag |
196 |
Q |
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| T |
24260478 |
tatatctatcgatacatgataaaacatacatcattggttgtctatatggttttcaaacaaaaaccgagaaaaaaataagattaataattattatgcaaag |
24260577 |
T |
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| Q |
197 |
aaacacatactttgaattgattgcatagtaagttcactcccttgtaaacttaaactcttgagggaagaaagtctactaagaggagatgcaatatcagtgt |
296 |
Q |
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| T |
24260578 |
aaacacatactatgaattgatctcattgtaagttgactccatcctaaacttaaactcttgagtgaagaaagtccactaagagcagatgcaatatcagttt |
24260677 |
T |
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| Q |
297 |
ctttgaagttgttgtttgaaaggtcaaggatctcaaggttcttcaatatagcgcacaatcctacatgttaaattaat |
373 |
Q |
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| T |
24260678 |
ctttgaagttgttgttcgaaaggtcaaggatctcgagattctttaatatggcgcataatcctgcacgttaaattaat |
24260754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 24260072 - 24260197
Alignment:
| Q |
64 |
aaattgttcccaaacaattcaaggatctccagagatctgagttttgatatatctagcaatatataaacatacatggttggtggtctatatgtttttcaaa |
163 |
Q |
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| T |
24260072 |
aaattgttccaagataagtcaaggatctccaaagacctcagttttgatatatctagcaacatataaacatacatgattggaggtctatatgtttttcaaa |
24260171 |
T |
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| Q |
164 |
caaaaatggagaaagaaataagatta |
189 |
Q |
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| T |
24260172 |
caaaaatggagaaagaaataagatta |
24260197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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