View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20800_low_3 (Length: 483)

Name: NF20800_low_3
Description: NF20800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20800_low_3
NF20800_low_3
[»] chr8 (8 HSPs)
chr8 (4-483)||(4223655-4224130)
chr8 (383-444)||(3925010-3925071)
chr8 (226-308)||(4220012-4220098)
chr8 (385-444)||(3931231-3931290)
chr8 (385-444)||(4053848-4053907)
chr8 (393-442)||(4215476-4215525)
chr8 (243-306)||(41814450-41814513)
chr8 (411-482)||(4219933-4220003)
[»] chr1 (2 HSPs)
chr1 (390-447)||(5388870-5388927)
chr1 (390-442)||(5398416-5398469)
[»] chr4 (1 HSPs)
chr4 (396-441)||(11952603-11952648)
[»] chr2 (1 HSPs)
chr2 (393-443)||(13563761-13563811)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 483
Target Start/End: Complemental strand, 4224130 - 4223655
Alignment:
Q  4 attattctctgatcatcatggaagactttgagctgaggtgggtgggtggtttggaattgtgcacatcttatagtactgaggacaaaaggtaggagtaaca 103  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  4224130 attaatctctgatcatcatggaagactttgagctgaggtgggtggggggtttggaattgtgcacatcttatagtactgagcacaaaaggtaggactaaca 4224031  T
Q  104 aaaaagcacaatttgaacaaaatcacacaatctaaaatcggaatcg------tcttttgagaattgttaatagaatcatctttctccatttggtaactac 197  Q
    ||| | |||||||| ||||||||||||||||||| ||||||| |||      | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  4224030 aaataacacaatttaaacaaaatcacacaatctataatcggattcggaattgttttttgagaattgtaaatagaatcatctttctccatttggtaactac 4223931  T
Q  198 ctcttcctccaccttcaacattgtaaccattcataattgtcacaccaacaaggagaactagaacaaatgaaacatttatgatttttgccataatatatga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||| ||||| |    
T  4223930 ctcttcctccaccttcaacattgtaaccattcataattgtcacactaataaggagaactagaacaaatgaaaaattgatgatttttgccatagtatataa 4223831  T
Q  298 tcaatgagaatgagaatattagtactcttttttacactagcttg-nnnnnnnnnnnnctctgattgcatggaatgatcagttggctctaaaatcactcca 396  Q
    |       |||||||||||||| |||| ||||||||||||||||             ||||||||||||||||||   ||||||||||||||||| | ||    
T  4223830 t-------aatgagaatattagcactc-tttttacactagcttgtttttaattttttctctgattgcatggaatg---agttggctctaaaatcatttca 4223742  T
Q  397 atttatagaactaatattttccttaaatgagaagtgaatgaattaaatttgctttgagtggggaaaattattctcacaaatttgaag 483  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4223741 atttatagaactaatattttccttaaatgagaagtgaatgaaataaatttgctttgagtggggaaaattattctcacaaatttgaag 4223655  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 3925010 - 3925071
Alignment:
Q  383 ctaaaatcactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaat 444  Q
    |||||||||||||||||||||| ||||||  || ||||||||||||||||||| ||||||||    
T  3925010 ctaaaatcactccaatttataggactaattattaccttaaatgagaagtgaatcaattaaat 3925071  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 4220098 - 4220012
Alignment:
Q  226 attcataattgtcacaccaacaaggagaactagaacaaatgaaacatttatgatttttgcc----ataatatatgatcaatgagaat 308  Q
    |||||||||||| |||  |||||| ||||||||||||||||||||| | |||||||||| |    ||| ||||||||||||||||||    
T  4220098 attcataattgtaacaataacaagaagaactagaacaaatgaaacactgatgatttttgtcatatatagtatatgatcaatgagaat 4220012  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 3931231 - 3931290
Alignment:
Q  385 aaaatcactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaat 444  Q
    |||||||||||||||||||| | ||||  || ||||||||||||||||||| ||||||||    
T  3931231 aaaatcactccaatttataggattaattattaccttaaatgagaagtgaatcaattaaat 3931290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 4053907 - 4053848
Alignment:
Q  385 aaaatcactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaat 444  Q
    |||||||||||||||||||| |||| |  || ||||||||||||||||||| ||||||||    
T  4053907 aaaatcactccaatttataggactattgattaccttaaatgagaagtgaatcaattaaat 4053848  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 4215525 - 4215476
Alignment:
Q  393 tccaatttatagaactaatattttccttaaatgagaagtgaatgaattaa 442  Q
    ||||||||||||| ||| |  |||||||||||||||||||||||||||||    
T  4215525 tccaatttatagatctattgatttccttaaatgagaagtgaatgaattaa 4215476  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 41814450 - 41814513
Alignment:
Q  243 caacaaggagaactagaacaaatgaaacatttatgatttttgccataatatatgatcaatgaga 306  Q
    ||||||||||||||| ||  ||||||  | | ||||||||||||||| ||||||||||||||||    
T  41814450 caacaaggagaactaaaatcaatgaagtagtgatgatttttgccatagtatatgatcaatgaga 41814513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 482
Target Start/End: Complemental strand, 4220003 - 4219933
Alignment:
Q  411 tattttccttaaatgagaagtgaatgaattaaatttg-ctttgagtggggaaaattattctcacaaatttgaa 482  Q
    ||||||||||||||||  |||||||||||||||||||  |||| ||| ||||||||||| ||| ||| |||||    
T  4220003 tattttccttaaatga--agtgaatgaattaaatttgattttgcgtgaggaaaattattttcaaaaaattgaa 4219933  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 5388927 - 5388870
Alignment:
Q  390 cactccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaatttg 447  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  5388927 cactgcaatttatcgaactaatgatttccttaaatgagaagtgaatgaattaaatttg 5388870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 5398469 - 5398416
Alignment:
Q  390 cactccaatttatagaacta-atattttccttaaatgagaagtgaatgaattaa 442  Q
    |||||| ||||||||||||| ||  |||||||||||||||||||||||||||||    
T  5398469 cactccgatttatagaactatatgatttccttaaatgagaagtgaatgaattaa 5398416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 11952603 - 11952648
Alignment:
Q  396 aatttatagaactaatattttccttaaatgagaagtgaatgaatta 441  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||    
T  11952603 aatttatagaactagtgatttccttaaatgagaagtgaatgaatta 11952648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 13563811 - 13563761
Alignment:
Q  393 tccaatttatagaactaatattttccttaaatgagaagtgaatgaattaaa 443  Q
    |||||||||| |||||| | ||||||||||||| |||||||||| ||||||    
T  13563811 tccaatttatggaactactgttttccttaaatgtgaagtgaatggattaaa 13563761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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