View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20800_low_5 (Length: 297)
Name: NF20800_low_5
Description: NF20800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20800_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 2973170 - 2973058
Alignment:
| Q |
170 |
aaacgtaatcagtaaagtaatcaccttggtgccatcatcaatggtattaagtcgacaaagagaagcataaatgtctcttttacccaaattgataggaaaa |
269 |
Q |
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| T |
2973170 |
aaacataatcagtaaagtaatcaccttggtgccatcatcaatggtattaagtcgacaaagagaagcataaatgtctcttttacccaaattgataggaaaa |
2973071 |
T |
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| Q |
270 |
tgatgaaagattt |
282 |
Q |
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| T |
2973070 |
tgatgaaagattt |
2973058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 2973330 - 2973236
Alignment:
| Q |
10 |
aaaatcaattctacataaccaatcattcaaaatccctttttgtcacgcagaaccaaacatacactaaaccatttaagcatcttcaacttctaatt |
104 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2973330 |
aaaatcaattctacataaccaatcattcaaaatccatttttgtcacgcagaaccaaacatacactaaaccatttaagcatcttcaacttctaatt |
2973236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 7533917 - 7533961
Alignment:
| Q |
34 |
attcaaaatccctttttgtcacgcagaaccaaacatacactaaac |
78 |
Q |
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| T |
7533917 |
attcaaaatcaattattgttacgcagaaccaaacatacactaaac |
7533961 |
T |
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