View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20801_high_1 (Length: 412)
Name: NF20801_high_1
Description: NF20801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20801_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 394
Target Start/End: Original strand, 3036678 - 3037059
Alignment:
| Q |
14 |
agattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa-aatgcaaattatgctcaatttgaagatgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
3036678 |
agattctattgagtgttataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatgg |
3036777 |
T |
|
| Q |
113 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgctcaaatcatatgatagggagaaag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3036778 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgctcaaatcatatgatagggacaaag |
3036877 |
T |
|
| Q |
213 |
gattggttattgaagtttgataataactttagagaatcattaaagttaggtgatgattcaagaatgtcatttataggaagaggtgacttgaagttactca |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
3036878 |
gattggttattgaattttgataataactttagagaatcattgaagttaggtgatgattcaagaatgtcagttatgggaagaggtgacttgaagttactca |
3036977 |
T |
|
| Q |
313 |
ttggtggtatgattcaggtcataactaatgtgtattacttgcctagacttagaaacaatttacttagtattggccaacttca |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036978 |
ttggtggtatgattcaggtcataactaatgtgtattacttgcctagacttagaaacaatttacttagtattggccaacttca |
3037059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 394
Target Start/End: Original strand, 20542361 - 20542734
Alignment:
| Q |
22 |
ttgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgct |
121 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| || |
|
|
| T |
20542361 |
ttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaaaatgctaactttgctgagtttgaagatggtgaattact |
20542460 |
T |
|
| Q |
122 |
tctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgctcaaatcatatgatagggagaaaggattggtta |
221 |
Q |
| |
|
||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||||| | ||| || ||| || |
|
|
| T |
20542461 |
tcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtttcttgattttggctgttcaaatcatatgataggaacaaatgagtggcta |
20542560 |
T |
|
| Q |
222 |
ttgaagtttgataataactttagagaatcattaaagttaggtgatgattcaagaatgtcatttataggaagaggtgacttgaagttactcattggtggta |
321 |
Q |
| |
|
|| | ||||||| | | |||||||||||| | ||| ||||||||||||| |||||| | |||| |||||||| ||||||| || || |||||||| | |
|
|
| T |
20542561 |
tttgattttgatagtgagtttagagaatcaatgaagctaggtgatgattctagaatgcctgttatgggaagaggaaacttgaaattgcttattggtggca |
20542660 |
T |
|
| Q |
322 |
tgattcaggtcat-aactaatgtgtattacttgcctagacttagaaacaatttacttagtattggccaacttca |
394 |
Q |
| |
|
||||||| ||||| || |||||||||| | ||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
20542661 |
tgattcaagtcataaaaaaatgtgtattttcttcctggacttagaaacaattttcttagtattggacaacttca |
20542734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 394
Target Start/End: Complemental strand, 40612949 - 40612577
Alignment:
| Q |
22 |
ttgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgct |
121 |
Q |
| |
|
||||||||| |||||||| | || |||||||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| || |
|
|
| T |
40612949 |
ttgagtgttttaagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattact |
40612850 |
T |
|
| Q |
122 |
tctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgctcaaatcatatgatagggagaaaggattggtta |
221 |
Q |
| |
|
||| ||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||| | |||||| ||| || |
|
|
| T |
40612849 |
tcttatggcccaatcttgcttgaacacaaacgccaaagatgaggtatggtttcttgattctagctgttcaaatcatatgataggaacaaaggagtggcta |
40612750 |
T |
|
| Q |
222 |
ttgaagtttgataataactttagagaatcattaaagttaggtgatgattcaagaatgtcatttataggaagaggtgacttgaagttactcattggtggta |
321 |
Q |
| |
|
|| | ||||||| | | |||||||||||| | || ||||||||||||| |||||| |||| |||||||| ||||||| || || |||||||| | |
|
|
| T |
40612749 |
tttgattttgatagtgagtttagagaatcagtgaaactaggtgatgattccagaatgcttgttatgggaagaggaaacttgaaattgcttattggtggca |
40612650 |
T |
|
| Q |
322 |
tgattcaggtcataactaatgtgtattacttgcctagacttagaaacaatttacttagtattggccaacttca |
394 |
Q |
| |
|
||||| | |||||||| ||||||||||| | ||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
40612649 |
tgatttaagtcataacaaatgtgtattatcttcctggacttagaaacaattttcttagtattggacaacttca |
40612577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 299 - 392
Target Start/End: Complemental strand, 27982146 - 27982053
Alignment:
| Q |
299 |
cttgaagttactcattggtggtatgattcaggtcataactaatgtgtattacttgcctagacttagaaacaatttacttagtattggccaactt |
392 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
27982146 |
cttgaaattactcattggtggtatgatttaggtcataactaatgtgtattacttgcctggacttagaaacagtttacttagtattggacaactt |
27982053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 299 - 392
Target Start/End: Complemental strand, 28039448 - 28039355
Alignment:
| Q |
299 |
cttgaagttactcattggtggtatgattcaggtcataactaatgtgtattacttgcctagacttagaaacaatttacttagtattggccaactt |
392 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
28039448 |
cttgaaattactcattggtggtatgatttaggtcataactaatgtgtattacttgcctggacttagaaacagtttacttagtattggacaactt |
28039355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 16863445 - 16863663
Alignment:
| Q |
33 |
aagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctc |
132 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| ||||||| | |||||||| | |||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
16863445 |
aagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctc |
16863544 |
T |
|
| Q |
133 |
aatcatgcatgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgctcaaatcatatgatagggagaaaggattggttattgaagtttga |
232 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||| |||||| |||| | ||||| |
|
|
| T |
16863545 |
aatcatgtttgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgttcaaaccatatgataggaacaaaagattggctatttgattttga |
16863644 |
T |
|
| Q |
233 |
taataactttagagaatca |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
16863645 |
cagtaactttagagaatca |
16863663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 394
Target Start/End: Original strand, 16863674 - 16863780
Alignment:
| Q |
288 |
ggaagaggtgacttgaagttactcattggtggtatgattcaggtcataactaatgtgtattacttgcctagacttagaaacaatttacttagtattggcc |
387 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||| |||| ||||||||||||||| | ||| |||||| ||| ||||| ||||||||||| | |
|
|
| T |
16863674 |
ggaagaggtaacttgaaattgctcattggtggtatgattcaagtcacaactaatgtgtattatcttcctggacttataaataattttcttagtattggac |
16863773 |
T |
|
| Q |
388 |
aacttca |
394 |
Q |
| |
|
||||||| |
|
|
| T |
16863774 |
aacttca |
16863780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 31 - 373
Target Start/End: Original strand, 20529064 - 20529396
Alignment:
| Q |
31 |
ataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggc |
130 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| ||||| |
|
|
| T |
20529064 |
ataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggc |
20529163 |
T |
|
| Q |
131 |
tcaatcatgcatgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgctcaaatcatatgatagggagaaaggattggttattgaagttt |
230 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||| | ||||||||||||||| | ||| |
|
|
| T |
20529164 |
tcaaacatgattgaacacaaatgtcaaagatgaggtatggtttcttgattaaggttattataatcatatgataggaacaaaggattggttatttgatttt |
20529263 |
T |
|
| Q |
231 |
gataataactttagagaatcattaaagttaggtgatgattcaagaatgtcatttataggaagaggtgacttgaagttactcattggtggtatgattcagg |
330 |
Q |
| |
|
||| ||||| || | || ||||| ||||| || | ||||||| |||| | ||||||| | |||||||||||||||||||||||||||| | |
|
|
| T |
20529264 |
gatgataac----------caatgaaattaggagatgactccaaaatgtcagttatggaaagaggtaatatgaagttactcattggtggtatgattcatg |
20529353 |
T |
|
| Q |
331 |
tcataactaatgtgtattacttgcctagacttagaaacaattt |
373 |
Q |
| |
|
| ||||| ||||| |||||||||| | | |||||||| ||||| |
|
|
| T |
20529354 |
ttataaccaatgtttattacttgcatgggcttagaaataattt |
20529396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University