View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20801_high_2 (Length: 227)
Name: NF20801_high_2
Description: NF20801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20801_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 2223538 - 2223681
Alignment:
| Q |
68 |
aattgaaaatagttgattaccatggtccatagagtaaggagataaagagaattagaagtagaaacgtatagagaactgagaagcttaactatcataaaat |
167 |
Q |
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| T |
2223538 |
aattgaaaatagttgattaccatggtccatagagtaaggagataaagagaattagaagtagaaacgtatagagaactgagaagcttaactatcattaaat |
2223637 |
T |
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| Q |
168 |
agaagcacataaagaactaaactttcttaactaacatatgatag |
211 |
Q |
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| T |
2223638 |
agaagcacataaagaactaaactttcttaactaacatatgatag |
2223681 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 2223516 - 2223548
Alignment:
| Q |
16 |
catagggtggatgcataaagataattgaaaata |
48 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2223516 |
catagggtggatgcataaagataattgaaaata |
2223548 |
T |
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