View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20802_high_1 (Length: 441)
Name: NF20802_high_1
Description: NF20802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20802_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 2715157 - 2714788
Alignment:
| Q |
13 |
aatatggcatcaagtcatgttgtagaagacatgcggaacaaaaacaaggaaggtagagaaggacatcaacacaagtagctagatatcatggaatggttca |
112 |
Q |
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| T |
2715157 |
aatatggcatcaagtcatgttgtagaagacatgcggaacaaaaacaaggaaggtagagaaggacatcaacacaagtagctagatatcatggaatggttca |
2715058 |
T |
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| Q |
113 |
tagaaacataatgtaatatggtgaaaatgaattttgtagtgactttgaatctcatgcattttgttgacttcagacnnnnnnnatgagagaaaagtgagaa |
212 |
Q |
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| T |
2715057 |
tagaaacataatgtaatatggtgaaaatgaattttatagtgactttgaatctcatgcattttgttgacttcagacttttttcatgagagaaaagtgagaa |
2714958 |
T |
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| Q |
213 |
agtgatccagaaaaataaagatatagtgtattatactcatatgagaatgatagataaaatggttgggtgtattttccaccatataggtagagaatctatg |
312 |
Q |
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| T |
2714957 |
agtgatccagaaaaataaagatatagtgagttatactcatatgagaatgatagataaaatggttgggtgtattttccaccacataggtagagaatctatg |
2714858 |
T |
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| Q |
313 |
tcgtatgatacgttaagagaatcggttgtatggaagttttgtcatattaaaaaataaatatttaagagta |
382 |
Q |
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| T |
2714857 |
tcgtatgatctattaagaaaatcgattgtatggaagttttgtcatattgaaaaataaatatttaagagta |
2714788 |
T |
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