View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20802_low_4 (Length: 305)
Name: NF20802_low_4
Description: NF20802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20802_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 9232966 - 9232720
Alignment:
| Q |
10 |
attattctgtatgtatatacgtataaatcttaagatcttagtaagggatatatttatgattaagttaaaccttatgtgattgaatatgcatgtaagttaa |
109 |
Q |
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| T |
9232966 |
attattctgtatgtatatacgtataaatcttaagatcttagtgggggatatatttatgattaagttaaaccttatgtgattgaatatgcatgtaagttaa |
9232867 |
T |
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| Q |
110 |
actttcatctggaaaatcaagtcc---taattaaaatatatttnnnnnnnnnnnnttaagggtacattttccctttataaggtttggaatctgctattgt |
206 |
Q |
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| T |
9232866 |
actttcatctggaaaatcaagtcctaataattaaaatatattttaaaaaaaaaaattaagggtaca-tttccctttaaaaggtttggaatctgctattgt |
9232768 |
T |
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| Q |
207 |
tatgaaggaagtatcataaaacgaaatgtacttaaagcagtgaaatta |
254 |
Q |
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| T |
9232767 |
tatgaaggaagtatcataaaacgaaatgtacttaaagcagtgaaatta |
9232720 |
T |
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