View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_10 (Length: 463)
Name: NF20803_high_10
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 37 - 443
Target Start/End: Original strand, 48876664 - 48877070
Alignment:
| Q |
37 |
acccctttttctatagggctagtcactagagatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
136 |
Q |
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| T |
48876664 |
acccctttttctatagggctagtcactagtgatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
48876763 |
T |
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| Q |
137 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcgttgcaaaattattaagaaatgccagtagatatgattttaccaaa |
236 |
Q |
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| T |
48876764 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcattgcaaaattattaagaaatgccagtagatatga-tttaccaaa |
48876862 |
T |
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| Q |
237 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggac-nnnnnnnntctattcg |
335 |
Q |
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| T |
48876863 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggacaaaaaaaaatctattcg |
48876962 |
T |
|
| Q |
336 |
tatagccatgaacttactggccatctcgctgaagttcagagcaacctctttgcaatgcaccggattgccacagtgcctgctccatgccgagttctgtcag |
435 |
Q |
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| T |
48876963 |
tatagccatgaacttactggcgatctcgctgaagttcagagcaacctctttgcaatgcaccggattgccacagtgcctgctccatgacgagttctgtcag |
48877062 |
T |
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| Q |
436 |
taaaccct |
443 |
Q |
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| T |
48877063 |
taaaccct |
48877070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48876572 - 48876609
Alignment:
| Q |
1 |
atgttgttgaaatgtgcagtcattttgatttctgttac |
38 |
Q |
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| T |
48876572 |
atgttgttgaaatgtgcagtcattttgatttctgttac |
48876609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 8381420 - 8381353
Alignment:
| Q |
240 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgtta |
307 |
Q |
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| T |
8381420 |
ggccaaagcttgttcctcagctagcattgatcggctcaagaacttgaatagaagaactgttgatgtta |
8381353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 53456860 - 53456785
Alignment:
| Q |
240 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatct |
315 |
Q |
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||||||||||||| | || |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
53456860 |
ggccaaagcttgttcttcagctagtgttgcttggctgaagaatgtgaacagaagaactgttgatgttattgcatct |
53456785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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