View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_14 (Length: 441)
Name: NF20803_high_14
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 55380373 - 55380794
Alignment:
| Q |
1 |
caaaccaaccaacgtataaaataactaatgccctcccttttccctttcagtttatgtataattctgactacctacagcagtaacatagcagttactacac |
100 |
Q |
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| T |
55380373 |
caaaccaaccaacatataaaataactaatgccctcctttttccctttcagtttatgtataattctgactacctacagcagtaacatagcagttactacac |
55380472 |
T |
|
| Q |
101 |
acaacaattaataataagaaaatgaactacctattactaacataataacgatgatatacaaaactttttaaacgattcacagcaaaaccagaacttaaca |
200 |
Q |
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| T |
55380473 |
acaacaattaataataagaaaatgaactacctattactaacataataacgatgatgtacaaaactttttaaacaattcacagcaaaaccagaacttaaca |
55380572 |
T |
|
| Q |
201 |
tataaatatgtcttgaaaaaccaatgaactatactacatatagaattatttattggcagcaagttagtgagggttctacctccaacaaagacaccaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55380573 |
tataaatatgtcttgaaaaaccaatgaactatactacatatagaattatttattggcagcaagttagtgagggttctacctccaacaaagacaccaattc |
55380672 |
T |
|
| Q |
301 |
caagttctatctccaacaagtatacctgtgcacctaaatcctgaaattcagaaataaatggcaagtagctgccttttgttaatggaattggaaacaagtt |
400 |
Q |
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| T |
55380673 |
caagttctatctccaacaagtatacctgtgcacctaaatcctgaaattcagaaataaatggcaagtagctgccttttgttaatggaattggaaacaagtt |
55380772 |
T |
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| Q |
401 |
gttgaatgcatgtggagtttcc |
422 |
Q |
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| T |
55380773 |
gttgaatgcatgtggagtttcc |
55380794 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35642 - 35690
Alignment:
| Q |
1 |
caaaccaaccaacgtataaaataactaatgccctcccttttccctttca |
49 |
Q |
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|||||||||||||||| |||||| |||| || ||||||||||||||||| |
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| T |
35642 |
caaaccaaccaacgtacaaaatacctaaagctctcccttttccctttca |
35690 |
T |
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