View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_18 (Length: 421)
Name: NF20803_high_18
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 404
Target Start/End: Complemental strand, 35350396 - 35350013
Alignment:
| Q |
22 |
gaaacgctgcagtttagaatactgaagccatgaagataacttttcaagtcaa-tagtcagaattataaattccttccttgnnnnnnnnnttagtcagaat |
120 |
Q |
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| T |
35350396 |
gaaacactgcagtttagaatactgaagccatgaagataacttttcaagtcaaatagtcagaattataaattccttccttcaaaaaaaaaatagtcagaat |
35350297 |
T |
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| Q |
121 |
tataaagtcattataatgatatgaaactgctgaataaaaatgaggtacataatctttgaatacataaaaatgagtttggaaaatttgcactattagtaac |
220 |
Q |
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| T |
35350296 |
tataaagccattataatgatatgaaactgctgaataaaaatgagatacataatttttgaataaataaaaatgagtttggaaaatttgcactattagtaac |
35350197 |
T |
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| Q |
221 |
aattatgaccgcctataatttttatagttataaccaaccactgcaataacctaaatatggatgttagcattgtcctgagaattatataatggaactaaat |
320 |
Q |
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|| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35350196 |
aaatatggccgcctataatttttatagttataaccaactactgcaataacctaaatatggatgttagcactgtcctgagaattatataatggaactaaat |
35350097 |
T |
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| Q |
321 |
cagacagaaatttaattaaggaccaactaaggtctgaacacaatttgatagtcaggttaggacatgaagctaactaccttattt |
404 |
Q |
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| T |
35350096 |
cggacagaaatttaattaaggaccaactaaggtctgaacacaatttgatagtcaggttaggacatgacgctaactaccttattt |
35350013 |
T |
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