View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_21 (Length: 382)
Name: NF20803_high_21
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_21 |
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| [»] scaffold0247 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 15080167 - 15080551
Alignment:
| Q |
1 |
cacataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080167 |
cacataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacc |
15080266 |
T |
|
| Q |
101 |
ttgaacaaacagtgacacgcaacaatccagaacacactag----gagagaattgaatatcacgatataataaacaacgatacaaacaaaaaccaagaaca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
15080267 |
ttgaacaaacagtgacacgcaacaatccagaacacactagctaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaagaaca |
15080366 |
T |
|
| Q |
197 |
caaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
15080367 |
caaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcagcaattcatcaattcaacatttaaacgtaagctagat |
15080466 |
T |
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| Q |
297 |
caaaaagaaaagcgattacgagaataagtatccaa-ccccttaccttaagaaaatcgatcggtag----ctcttggttcttctctc |
377 |
Q |
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|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
15080467 |
caaaaagaaaagtgatt-cgagaataagtatccaacccccttaccttaagaaaatcgatctgcagttctctcttggttcttctctc |
15080551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 13515650 - 13516034
Alignment:
| Q |
1 |
cacataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515650 |
cacataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacc |
13515749 |
T |
|
| Q |
101 |
ttgaacaaacagtgacacgcaacaatccagaacacactag----gagagaattgaatatcacgatataataaacaacgatacaaacaaaaaccaagaaca |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
13515750 |
ttgaacaaacagtgacacgcaacaatccagaacacactagctaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaagaaca |
13515849 |
T |
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| Q |
197 |
caaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
13515850 |
caaataatcacatacccaaatttgcacataaattaagggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaatgtaagctagat |
13515949 |
T |
|
| Q |
297 |
caaaaagaaaagcgattacgagaataagtatccaacccc-ttaccttaagaaaatcgatcggtagctct----tggttcttctctc |
377 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
13515950 |
caaaa-gaaaagtgattacgagaataagtatccaacccccttaccttaagaaaatcgatcggcagctctctcttggttcttctctc |
13516034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 15684973 - 15684615
Alignment:
| Q |
1 |
cacataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacc |
100 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15684973 |
cacataatcccaatttcatatatcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacc |
15684874 |
T |
|
| Q |
101 |
ttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgatataataaacaacgatacaaacaaaaacc-aagaacacaa |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
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| T |
15684873 |
ttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaaagaacacaa |
15684774 |
T |
|
| Q |
200 |
ataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagatcaa |
299 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
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| T |
15684773 |
ataatcacatacccaaatttgcacataaattaagggcataaaattcaccaaacaaaatcatcaattcaaca-------atttaaacgtaagctagatcaa |
15684681 |
T |
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| Q |
300 |
aaagaaaagcgattacgagaataagtatccaa-ccccttaccttaagaaaatcgatcggtagctct |
364 |
Q |
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|||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
15684680 |
aaagaaaattgtttatgagaataagtatccaacccccttaccttaagaaaatcgatcggcagctct |
15684615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 32655676 - 32655755
Alignment:
| Q |
87 |
ttcacatagcaaccttgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgatataat |
166 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||| |||||||||| |
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| T |
32655676 |
ttcacatagcaaccttgaacaaacagtgttgcacaacaatccagaacacaccagtagagaattgtatataacgatataat |
32655755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 1395 - 1360
Alignment:
| Q |
243 |
ttcaccaaacaaaatcatcaattcatcaattcaaca |
278 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
1395 |
ttcacaaaacaaaatcatcaattcatcaattcaaca |
1360 |
T |
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