View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_22 (Length: 378)
Name: NF20803_high_22
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 42214508 - 42214227
Alignment:
| Q |
1 |
caaattcttttggaacccttcctgttatgttggttgacgagaggacaagaacctttaaggacttgagaggttgaaaatttgaaggcaatgatgagccttg |
100 |
Q |
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| T |
42214508 |
caaattcttttggaacccttcctgttatgttggttgacgagaggacaagaacctttaaggacttgagaggttgaaaatttgaaggcaatgatgagccttg |
42214409 |
T |
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| Q |
101 |
caagttcaatgatttcaagtttatctcttctacctctccttgtaaattgcacttcacaccaaaccaattacatggtgtttggtttgaaaggttccaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214408 |
caagttcaatgatttcaagtttatctcttctacctctccttgtaaattgcacttcacaccaaaccaattacatggtgtttggtttgaaaggttccaagat |
42214309 |
T |
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| Q |
201 |
gctaatacatctgaagtagtgtttaaactctccttccatgctataagagcttggccttgttcatcaagagagttacaacatg |
282 |
Q |
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| T |
42214308 |
gctaatacatctgaagtagtgtttaaactctccttccatgctataagagcttggccttgttcatcaagagagttacaacatg |
42214227 |
T |
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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 24155924 - 24155754
Alignment:
| Q |
6 |
tcttttggaacccttcctgttatgttggttgacgagaggacaagaacctttaaggacttgagaggttgaaaatttgaaggcaatgatgagccttgcaagt |
105 |
Q |
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|||||||| | | ||||||| ||||| ||||| ||||||| ||| |||||||||||| |||| ||||||||||||||| | ||||||||| |||| |
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| T |
24155924 |
tcttttggtatctttcctgtgatgtttgttgatgagaggatgagagactttaaggacttcagagattgaaaatttgaagg---taatgagccttctaagt |
24155828 |
T |
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| Q |
106 |
tcaatgatttcaagtttatctcttctacctctccttgtaaattgcacttcacaccaaaccaattacatggtgtt |
179 |
Q |
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| T |
24155827 |
tcattgacttcaagtttatctctatcacatctccctgtgaattgcaaaacactccaaaccaattgcaaggtgtt |
24155754 |
T |
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