View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20803_high_23 (Length: 370)
Name: NF20803_high_23
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 35386876 - 35386567
Alignment:
| Q |
7 |
tcgaagaatatgctgatcaacatcgactacaaacattttttaactttctttt----------aatttatcattagcagaaacatttctgccaaaaatagg |
96 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35386876 |
tcgaagaaaatgctgatcaacatcgactccaaacattttttaacttttttttttttttttttaatttatcattagcagaaacatttctgccaaaaatagg |
35386777 |
T |
|
| Q |
97 |
aaaataaaattcttatgatcgaaggagtctatactagtagagacaagtgttccttcttcattgccacgagtcattccttggtactcttaagtcagtatcc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35386776 |
aaaataaaattcttatgatcgaaggagtctatactagtagagacaagtgttccttcttcattgccacgagtcattccttggtactcttaagtcagtatcc |
35386677 |
T |
|
| Q |
197 |
attctccaacattccaagtgtctcttgctcacttactcacaccttatatacattgattcactcaatatatatttgttggtacctcacaaataaaacatac |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35386676 |
attctccaacattccaagtgtctcttgctcacttactcacaccttatatacattcattcactcaatatatatttgttggtacctcacaaataatacatac |
35386577 |
T |
|
| Q |
297 |
ttatagtatt |
306 |
Q |
| |
|
|||||||||| |
|
|
| T |
35386576 |
ttatagtatt |
35386567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 35386544 - 35386493
Alignment:
| Q |
298 |
tatagtatttatatttactagtagcaaaggtagctacaacttcagtagtgag |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35386544 |
tatagtatttatatttactagtagcaaaggtagctacaacttcagtagtgag |
35386493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University