View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_25 (Length: 360)
Name: NF20803_high_25
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 7382428 - 7382092
Alignment:
| Q |
13 |
aatataataaaaataaataaattggtctattacgttacaaatgttacaataagttagccattttagtcaaatttctacttcaaatgtatatctaactaac |
112 |
Q |
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| T |
7382428 |
aatataataaaaataaataaattggtctattacgttacaaatgttacaataacttagccattttggtcaaatttctacttcaaatgtatatctaactaac |
7382329 |
T |
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| Q |
113 |
gcacgtgtataaaccgaatggtttnnnnnnngttttccaaaatgttaataaaactggatttaggaaagttttcctcaaatttttatttttagtcatgatt |
212 |
Q |
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| T |
7382328 |
gcacgtgtataaaccgaatg-ttttaaaaaagttttccaaaatgttaataaaactggatttaggaaagttttcctcaaatttttatttttagtcatagtt |
7382230 |
T |
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| Q |
213 |
gaaccatgactaaattt-cagaaaaatccactt-----ggtatggtgatgtatgcttgagacattggagtgtttctttcaaggttttaggtttgatttca |
306 |
Q |
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| T |
7382229 |
gaaccatgactaaattttcagaaaaatccacttcgattggtttgatgatgtatgcttgagatattagagtgtttcttttaagattttaggtttgatttca |
7382130 |
T |
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| Q |
307 |
tctaatatcaattttgatgggtttgtctatatagtgtt |
344 |
Q |
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| T |
7382129 |
tctgatatcaattttgatgtgttagtctatatagtgtt |
7382092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 43532009 - 43532053
Alignment:
| Q |
44 |
acgttacaaatgttacaataagttagccattttagtcaaatttct |
88 |
Q |
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| T |
43532009 |
acgttacaaacgttacaataagttagtcattttagtcaaatttct |
43532053 |
T |
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