View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_28 (Length: 351)
Name: NF20803_high_28
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 44800194 - 44800531
Alignment:
| Q |
15 |
aaagaatagactcgttgaggcggctgatccgaaattgatgggggaatttgatgtaattgagatggagaggatgttattggtagggcttgtttgtgtgcat |
114 |
Q |
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| T |
44800194 |
aaagaatagactcgttgaggcggctgatccgaaattgatgggggaatttgatgtaattgagatggagaggatgttattggtagggcttgtttgtgtgcat |
44800293 |
T |
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| Q |
115 |
ccagattatgagaagaggcctagagttagagatgcagctagaatgataaagaaagaagcatcacttccattgttgcctacaactaaaccatgggtgagaa |
214 |
Q |
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| T |
44800294 |
ccagattatgagaagagacctagagttagagatgcagctagaatgataaagaaagaagcaccacttccattgttgcctacaactaaaccatgggtgagga |
44800393 |
T |
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| Q |
215 |
ttatgcctgtttgtcctaatgacacacctgaaacacaaga---tgttggtgactgggttagtaatgatgaggctccttatttgactcctaggagccaatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44800394 |
ttatgcctgtttgtcctaatgacacacctgaaactcaagatgttgttggtgattgggttagtaatgatgaggctccttatttgactcctaggagccaatt |
44800493 |
T |
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| Q |
312 |
ttactagaatttgattttgtatatacattttgaagtca |
349 |
Q |
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| T |
44800494 |
ttactagaatttgattttgtatatacattttgaagtca |
44800531 |
T |
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