View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20803_high_33 (Length: 317)

Name: NF20803_high_33
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20803_high_33
NF20803_high_33
[»] chr8 (2 HSPs)
chr8 (155-309)||(29594275-29594427)
chr8 (19-92)||(29594456-29594529)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 309
Target Start/End: Complemental strand, 29594427 - 29594275
Alignment:
Q  155 aaaaaatttaacattgttgcatcttagagagannnnnnnatcatctcattcaaatgtcgtcgtgtttattggtttattaattgtgannnnnnnnnnnnnn 254  Q
    ||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||| ||||||||||||||||||||||                  
T  29594427 aaaaaatttaacattgttgtatcttagagaaatttttttatcatctcattcaaatgtcgtcgtatttattggtttattaattgtgatttattttttttt- 29594329  T
Q  255 nggataaataggaaataaaaacaaatagaaattgagagtgacactatttcttctc 309  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29594328 -ggataaataggaaataaaaacaaatagaaattgagagtgacactatttcttctc 29594275  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 29594529 - 29594456
Alignment:
Q  19 gccacgacactaattttcattatttttataatnnnnnnnttatttcttttttatctatcttaactagcatcgtt 92  Q
    |||||||||||||||||||| |||||||||||       |||||||||| ||||||||||||||||||||||||    
T  29594529 gccacgacactaattttcatcatttttataatcaaaaaattatttctttgttatctatcttaactagcatcgtt 29594456  T

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