View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20803_high_37 (Length: 309)
Name: NF20803_high_37
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 36718554 - 36718377
Alignment:
| Q |
19 |
taatgttatgttttttgcttccttttattcttcagtagctatttttccattttgtgaaaaattgttgacaggaaatagaataaggtaggacaaagttaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36718554 |
taatgttatgttttttgcttccttttattcttcagtagctatttttccattttgtgaaaaattgttgacaggaaatagaataaggtaggacaaagttaga |
36718455 |
T |
|
| Q |
119 |
gaaagtaagagagacttaggttgatgttgtaattttgtaatccccttgttataggctaataataaatgtgggatatga |
196 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36718454 |
gaaagtaagagagacttacgttgatgttgtaattttgtaatccccttgttataggctaataataaatgtgggatatga |
36718377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 36718328 - 36718289
Alignment:
| Q |
245 |
aggtgatgaatgcgtctaattgaatggatttcattggttga |
285 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
36718328 |
aggtgatga-tgcgtctaattgaatggattttattggttga |
36718289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 35414072 - 35414204
Alignment:
| Q |
19 |
taatgttatgttttttgcttccttttattcttcagtagctatttttccattttgtgaaaaattgttgacaggaaatagaataaggtaggacaaagttaga |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||| |||| ||||||||| ||||||||| |
|
|
| T |
35414072 |
taatattatgttttttgcttccttttattctt-agtagctatttttccatcttgtgaaacattgttgataggaaacagaaaaaggtaggataaagttaga |
35414170 |
T |
|
| Q |
119 |
gaaagtaagagagacttaggttgatgttgtaatt |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35414171 |
gaaagtaagagagacttaggttgatgttgtaatt |
35414204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 27178690 - 27178640
Alignment:
| Q |
144 |
gttgtaattttgtaatccccttgttataggctaataataaatgtgggatat |
194 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27178690 |
gttgtaattttgtaatcccctagttttaggctaataataaatgtgggatat |
27178640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 13618656 - 13618607
Alignment:
| Q |
36 |
cttccttttattcttcagtagctatttttccattttgtgaaaaattgttg |
85 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13618656 |
cttccttttattcttccctagctatttttccattttgtgaagaattgttg |
13618607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 49250623 - 49250682
Alignment:
| Q |
100 |
aaggtaggacaaagttagagaaagtaagagagacttaggttgatgttgtaattttgtaat |
159 |
Q |
| |
|
||||||||| || ||||| || || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
49250623 |
aaggtaggagaaggttagggacagcgagagagacttaggttgttgttgtaattttgtaat |
49250682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University