View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20803_high_71 (Length: 221)
Name: NF20803_high_71
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_71 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 24116682 - 24116871
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116682 |
aagaaaaacaccatattctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
24116781 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24116782 |
tccaaccaagtttttgtaggattagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacatcgtaaa |
24116871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 24614695 - 24614503
Alignment:
| Q |
13 |
gagaagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgtta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24614695 |
gagaagaaaaacaccatgttctccatgatcttgtcttgatcggataaaagacacgctctcatgtttctaacaagaaaaacataaggtgttggaaccgtta |
24614596 |
T |
|
| Q |
113 |
aaatccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24614595 |
atatccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacatcgtaaa |
24614503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 23693251 - 23693062
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23693251 |
aagaaaaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaa |
23693152 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23693151 |
tccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatcagccaagtattcaacgtcgtaaa |
23693062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 23711691 - 23711502
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23711691 |
aagaaaaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaa |
23711592 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23711591 |
tccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatcagccaagtattcaacgtcgtaaa |
23711502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 23730147 - 23729958
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23730147 |
aagaaaaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaa |
23730048 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23730047 |
tccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatcagccaagtattcaacgtcgtaaa |
23729958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 23748602 - 23748413
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23748602 |
aagaaaaacaccatgtgctccatgatcttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaa |
23748503 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23748502 |
tccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatcagccaagtattcaacgtcgtaaa |
23748413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 23689793 - 23689604
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23689793 |
aagaaaaacaccatgttctccatgatcttgtcttcatcagaagaaacacatgcctttacgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
23689694 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
23689693 |
tccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatcagccatgtactcgacgtggtaaa |
23689604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 24062030 - 24061841
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062030 |
aagaaaaacaccatgttctccatgatcttgtcttcatcagaagaaacacatgcctttacgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
24061931 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatgtattcaacgtcgtaaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
24061930 |
tccaaccaagttcttgcaggataagcttctccatttgacatatttcttctggcatataaatataatcagccatgtactcgacgtggtaaa |
24061841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 24108975 - 24109148
Alignment:
| Q |
16 |
aagaaaaacaccatgttctccatgatcttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaa |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24108975 |
aagaaaaacaccatcttctccatgatcttatcttcatcagataaaaggcatgtccttatgtttctaataagaaaaacataaggtgttggaaccgttaaaa |
24109074 |
T |
|
| Q |
116 |
tccaaccaagttcttgtaggataagcttctccatttgacatatttcttccggcatataaatataatcagccatg |
189 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
24109075 |
tccaaccaagttcttgtaggattagcttctccatttgacatatttcttttggcatataaatgtaatcagccatg |
24109148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 11390754 - 11390684
Alignment:
| Q |
76 |
tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagcttctc |
146 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| |||||| ||||| | |||| ||| || ||||||||||| |
|
|
| T |
11390754 |
tttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttgcagtataagcttctc |
11390684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 11419870 - 11419940
Alignment:
| Q |
76 |
tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagcttctc |
146 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| |||||| ||||| | |||| ||| || ||||||||||| |
|
|
| T |
11419870 |
tttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttgcagtataagcttctc |
11419940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University