View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_high_74 (Length: 211)
Name: NF20803_high_74
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_high_74 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 953402 - 953599
Alignment:
| Q |
1 |
gtgttattttcttgttcaaagagttgcaatggccaacatcatttctactgcgatcccaattgagctcctttcggcatacctcaatatttgtcttcaactt |
100 |
Q |
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| T |
953402 |
gtgttattttcttgttcaaaaagttgcaatggccaacatcatttctactgcgatcccaattgagctcctttcggcatacctcaatatttgtcttcaactt |
953501 |
T |
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| Q |
101 |
gctatagtgagttttcttccgatgtaccaaatccccgacaacattccaagcgaggaataatatcgcagtcaaggttattgtcccaccattgtttcact |
198 |
Q |
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| T |
953502 |
gctatagtgagttttcttccgatgtaccaaatccccgacaacattccaagcgaggaataatatcgcagtcaaggttattgtcccaccattgtttcact |
953599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 29442849 - 29442726
Alignment:
| Q |
6 |
attttcttgttcaaagagttgcaatggccaacatcatttctactgcgatcccaattgagctcctttcggcatacctcaatatttgtcttcaacttgctat |
105 |
Q |
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|||||||||| |||||| || ||||| |||||||||||| |||| | ||||||||| |||||| || ||| ||||||||| |||||||||||| || |
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| T |
29442849 |
attttcttgtgcaaagaattacaatgaccaacatcatttgtactactatcccaatttagctccgcacgacattcctcaatatacgtcttcaacttgttac |
29442750 |
T |
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| Q |
106 |
agtgagttttcttccgatgtacca |
129 |
Q |
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| T |
29442749 |
aatgagttttattccaatgtacca |
29442726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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