View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_11 (Length: 458)
Name: NF20803_low_11
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 15079754 - 15080190
Alignment:
| Q |
16 |
cagtaattggaatagcaatgaaccaagtaaaaagtagggaaaataatagcaacttggacagcagaagaaattatcaaaatccaacttgtaattaagagaa |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15079754 |
cagtaattggaatggcaatgaaccaagtaaaaagtagggaaaataatagcaacttggacagcagaagaaattctcaaaatccaacttgtaattaagagaa |
15079853 |
T |
|
| Q |
116 |
tcacaactttagcttgtacttctaaagatacaaaaagcacgataagataactaccaaattgactctcaaacagactcatcatattacnnnnnnnntaaaa |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
15079854 |
tcacaactttagcttgtacttctaaagatacaaaaagcactataagataactaccaaattgactctgaaacagactcatcatattacaaaaaaaataaaa |
15079953 |
T |
|
| Q |
216 |
cttcacatgacaaggttctttttagttgctttccaattaaaatattatgaccatgatttcgagccacataaactccacaaccatgaagtcatgattcatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079954 |
cttcacatgacaaggttctttttagttgctttacaattaaaatattataaccatgatttcgagccacataaactccacaaccatgaagtcatgattcatc |
15080053 |
T |
|
| Q |
316 |
atcacatgaattaaaaagaaaacgtggaattggaaacaggacaagagtgtatttgaaatcaacatataataggcacttattaacaattaacgccccttat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15080054 |
atcacatgaattaaaaagaaaacgtggaattggaaacagcacaagagtgtatttgaaatcaacatataataggcactttttaacaattaacgccccttat |
15080153 |
T |
|
| Q |
416 |
atcaatcagtggtcacataatcccaatttcatatctc |
452 |
Q |
| |
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| T |
15080154 |
atcaatcagtggtcacataatcccaatttcatatctc |
15080190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 104 - 430
Target Start/End: Complemental strand, 15687706 - 15687375
Alignment:
| Q |
104 |
taattaagagaatcacaactttagcttgtacttctaaagatacaaaaagcacgataagataactaccaaattgactctcaaacagactcatcatattacn |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15687706 |
taattaagagaatcacaactttagcttgtacttctaaagatacaaaaagcactataagataactaccaagttgactctcaaacagactcatcatattaca |
15687607 |
T |
|
| Q |
204 |
nnnnnnntaaaa----cttcacatgacaaggttctttttagttgctttccaattaaaatattatgaccatgatttcgagccacataaactccacaaccat |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15687606 |
aaaaaataaaaaaaaccttcacatgacaaggttctttttagttgctttccaattaaaatattataaccatgatttcgagccacataaactccacaaccat |
15687507 |
T |
|
| Q |
300 |
gaagtcatgattcatcatcacatgaattaaaaagaaaacgtggaattgga-aacaggacaagagtgtatttgaaatcaacatataataggcacttattaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15687506 |
gaagtcatgattcatcatcacatgaattaaaaagaaaacgtggaattggataacagcacaagagtgtatttgaaatcaacatataataggcactttttaa |
15687407 |
T |
|
| Q |
399 |
caattaacgccccttatatcaatcagtggtca |
430 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
15687406 |
caattaacgccccttatatcaatcagtggtca |
15687375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 339 - 452
Target Start/End: Original strand, 13515560 - 13515673
Alignment:
| Q |
339 |
gtggaattggaaacaggacaagagtgtatttgaaatcaacatataataggcacttattaacaattaacgccccttatatcaatcagtggtcacataatcc |
438 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515560 |
gtggaattggaaacagcacaagagtgtatttgaaatcaacatataataggcactttttaacaattaacgccccttatatcaatcagtggtcacataatcc |
13515659 |
T |
|
| Q |
439 |
caatttcatatctc |
452 |
Q |
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| T |
13515660 |
caatttcatatctc |
13515673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 39340514 - 39340405
Alignment:
| Q |
92 |
aaatccaacttgtaattaagagaatcacaactttagcttgtacttctaaagatac-aaaaagcacgataagataactaccaaa-ttgactctcaaacaga |
189 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||| |
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| T |
39340514 |
aaatccaatttgtaatcaagagaatcacaactttagctagtacttctaaagatacgagaaagcactgcaagataactaccaaatttgactctcaaacaga |
39340415 |
T |
|
| Q |
190 |
ctcatcatat |
199 |
Q |
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|||||||||| |
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| T |
39340414 |
ctcatcatat |
39340405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 32655758 - 32655800
Alignment:
| Q |
157 |
ataagataactaccaaattgactctcaaacagactcatcatat |
199 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
32655758 |
ataagataactacaaaattgactctcaagcagactcatcatat |
32655800 |
T |
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