View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_12 (Length: 449)
Name: NF20803_low_12
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 37358292 - 37358709
Alignment:
| Q |
13 |
cagagaagtcaaagaagagacaggagtaagcaaaaacannnnnnnn-gtacagaaaaaacatatttaaatgaaatgtagtttaaccatatttaatatttg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
37358292 |
cagagaagtcaaagaagagacaggagtaagcaaaaacatttttttttgtacagaaaaaacatatttaaatgaaatgtagtttaaacat--ttaatatttg |
37358389 |
T |
|
| Q |
112 |
aaattcaaaccttttctaaggccattttgcttttattcatcttttcagatagaaactgagtttgttgaagttttagcattcaggtaagatttggatcaaa |
211 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
37358390 |
aaattcaaaccttttctaaggccatattgcttttattcatcttttcagatagaaactgagtttgttgaagttttagcattcaggtaagatttgaaccaaa |
37358489 |
T |
|
| Q |
212 |
aatattatcatatagtatgttgttggaacattaccatggattcatatatttggtatttttatctacaatttcaatcttannnnnnnnnnnnnnatggtta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37358490 |
aatattatcatatagtatgttgttggaacattaccatggattcatatatttggtatttttatctacaatttcaatctta---ttattttttttatggtta |
37358586 |
T |
|
| Q |
312 |
tatcagagaaagacataaatgtttcttccaaaaatcagagatactatttgtatgcatgttgaaacctcattcatttaacattcagagccaggtttcagag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
37358587 |
tatcagagaaagacataaatgtttcttccaaaaatcagagatactatttgtatgcatgttgaaacctcgttcatttaacattcagagccaagtttcagag |
37358686 |
T |
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| Q |
412 |
attgaggcagctcaggtatatgt |
434 |
Q |
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| T |
37358687 |
attgaggcagctcaggtatatgt |
37358709 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 38393114 - 38393142
Alignment:
| Q |
170 |
agtttgttgaagttttagcattcaggtaa |
198 |
Q |
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| T |
38393114 |
agtttgttgaagttttagcattcaggtaa |
38393142 |
T |
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