View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_16 (Length: 434)
Name: NF20803_low_16
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 25 - 413
Target Start/End: Original strand, 47712866 - 47713254
Alignment:
| Q |
25 |
aggagcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
124 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712866 |
aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
47712965 |
T |
|
| Q |
125 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712966 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
47713065 |
T |
|
| Q |
225 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggt |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47713066 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggt |
47713165 |
T |
|
| Q |
325 |
tacattgttcgggttcgacatataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47713166 |
tacattgttcgggttcgacatataaaactttggtgaccattcaagaatgccaaatattgattggtttgagtaacgcaacatgtagtcct |
47713254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 46 - 406
Target Start/End: Original strand, 47759802 - 47760162
Alignment:
| Q |
46 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
145 |
Q |
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||||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||| || ||||||| ||||| |||||| |||||||||| |||| |
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| T |
47759802 |
ttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattg |
47759901 |
T |
|
| Q |
146 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
245 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| ||| |
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| T |
47759902 |
caatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgac |
47760001 |
T |
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| Q |
246 |
gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggttcgacat |
345 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||| | |||||| |||||||||| |||||||| | |||| |||| |
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| T |
47760002 |
gagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacattatatatgttccacat |
47760101 |
T |
|
| Q |
346 |
ataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatg |
406 |
Q |
| |
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||||||||||||||| | ||| | || ||| |||||||||||||||||||||||||||||| |
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|
| T |
47760102 |
ataaaactttggtgaaccttccataacgccgaatattgatcggtttgagtaacgcaacatg |
47760162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 46 - 330
Target Start/End: Original strand, 47745479 - 47745754
Alignment:
| Q |
46 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
145 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||| | || ||||| ||||||| |||||| |||||||||||||||| |
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| T |
47745479 |
ttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattg |
47745578 |
T |
|
| Q |
146 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
245 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | | |||||||||| ||| |
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| T |
47745579 |
caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac |
47745669 |
T |
|
| Q |
246 |
gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacatt |
330 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |||||||| || |||| ||||||||||| |
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| T |
47745670 |
gagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacatt |
47745754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 40 - 330
Target Start/End: Original strand, 47717684 - 47717965
Alignment:
| Q |
40 |
atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa |
139 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||| ||||||||||| |||||| |||||||||| |
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| T |
47717684 |
atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaa |
47717783 |
T |
|
| Q |
140 |
tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaact |
239 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | | |||||||| |
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|
| T |
47717784 |
tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaact |
47717874 |
T |
|
| Q |
240 |
taagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacatt |
330 |
Q |
| |
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|| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||| |
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| T |
47717875 |
tacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatt |
47717965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 47704889 - 47704941
Alignment:
| Q |
46 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttat |
98 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| | |||||||||||||| |
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|
| T |
47704889 |
ttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat |
47704941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 47745794 - 47745830
Alignment:
| Q |
370 |
aatgccaaatattgatcggtttgagtaacgcaacatg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
47745794 |
aatgccaaatattgatcggtttgagtaacgcaacatg |
47745830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 47718008 - 47718046
Alignment:
| Q |
373 |
gccaaatattgatcggtttgagtaacgcaacatgtagtc |
411 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
47718008 |
gccgaatattgatcggtttgagtaacgcaacatgcagtc |
47718046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 47811779 - 47811738
Alignment:
| Q |
158 |
gacaaatcaggtgtacactgcacaagaccatatatggtttga |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
47811779 |
gacaaatcaggtgtacactgaacaagaccatttattgtttga |
47811738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 6521811 - 6521779
Alignment:
| Q |
374 |
ccaaatattgatcggtttgagtaacgcaacatg |
406 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
6521811 |
ccaaatattgaacggtttgagtaacgcaacatg |
6521779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 6522027 - 6521987
Alignment:
| Q |
158 |
gacaaatcaggtgtacactgcacaagaccatatatggtttg |
198 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
6522027 |
gacaaatcaggtgtgcattgaacaagaccatatatggtttg |
6521987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 28830931 - 28830976
Alignment:
| Q |
46 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatc |
91 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||||| |
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|
| T |
28830931 |
ttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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