View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20803_low_17 (Length: 430)

Name: NF20803_low_17
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20803_low_17
NF20803_low_17
[»] chr4 (3 HSPs)
chr4 (20-405)||(41068334-41068743)
chr4 (333-405)||(13327307-13327379)
chr4 (333-387)||(44453264-44453318)
[»] chr5 (5 HSPs)
chr5 (190-343)||(19936015-19936167)
chr5 (333-393)||(38302653-38302713)
chr5 (345-393)||(24069734-24069782)
chr5 (298-402)||(25247793-25247897)
chr5 (298-402)||(25311577-25311681)
[»] chr3 (23 HSPs)
chr3 (190-323)||(8480063-8480195)
chr3 (282-402)||(26421226-26421346)
chr3 (54-168)||(6479021-6479137)
chr3 (59-168)||(6519206-6519317)
chr3 (215-279)||(6553746-6553810)
chr3 (215-279)||(6736647-6736711)
chr3 (215-279)||(6947926-6947990)
chr3 (58-149)||(5251061-5251152)
chr3 (25-84)||(8479897-8479956)
chr3 (54-168)||(8590603-8590719)
chr3 (58-154)||(5299618-5299714)
chr3 (215-279)||(8590386-8590450)
chr3 (58-149)||(5268948-5269039)
chr3 (54-156)||(6553477-6553579)
chr3 (54-168)||(8455528-8455644)
chr3 (215-279)||(8455311-8455375)
chr3 (58-149)||(4387989-4388080)
chr3 (64-168)||(6736864-6736970)
chr3 (215-279)||(6479290-6479354)
chr3 (120-154)||(6948159-6948193)
chr3 (122-156)||(8479979-8480013)
chr3 (290-386)||(4861260-4861356)
chr3 (290-386)||(4881267-4881363)
[»] scaffold0425 (2 HSPs)
scaffold0425 (215-279)||(6785-6849)
scaffold0425 (54-156)||(6516-6618)
[»] chr2 (2 HSPs)
chr2 (290-371)||(24360997-24361078)
chr2 (333-393)||(32234601-32234661)
[»] chr7 (4 HSPs)
chr7 (333-387)||(28937267-28937321)
chr7 (333-405)||(32021801-32021873)
chr7 (297-354)||(1538149-1538206)
chr7 (362-402)||(22535766-22535806)
[»] chr8 (1 HSPs)
chr8 (345-393)||(19741883-19741931)
[»] chr6 (1 HSPs)
chr6 (334-402)||(15558572-15558640)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 41068334 - 41068743
Alignment:
Q  20 ggcttagactacttgagtaataataatgttgatgattgcactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatac 119  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||     
T  41068334 ggcttagactacttcggtaataataatgttgatgattgcactcaattctatcaaccatgtgttggaagaagcagagctataacagtaccaaagcatatat 41068433  T
Q  120 gtgaagaattggcttgatgaacttaaacatgttgtttgaagcagaccaaat----------------------aagttgaaaactcaatctgatttcttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                      ||| |||||||||||||||||||||||    
T  41068434 gtgaagaattggcttgatgaacttaaacatgttgtttgaagcagaccaaatttctaccgatgcaatgataaataagctgaaaactcaatctgatttcttg 41068533  T
Q  198 ggcttggt--cagctttaatgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtcaataatatggttcatga 295  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41068534 ggcttggtttcagctttaatgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtcaataatatgggtcatga 41068633  T
Q  296 gattcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagtat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |    
T  41068634 gattcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccgattatagattttcttagtct 41068733  T
Q  396 tttatttttt 405  Q
    ||||||||||    
T  41068734 tttatttttt 41068743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 13327307 - 13327379
Alignment:
Q  333 gagttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagtattttatttttt 405  Q
    ||||||||| |||||||||||||||| ||||||||  | |||||||||| |||||| |||| |||| ||||||    
T  13327307 gagttgcatctggatttctttcgagacagaattggcttgcccaattatagattttcgtagtcttttttttttt 13327379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 44453318 - 44453264
Alignment:
Q  333 gagttgcatatggatttctttcgagatagaattggtctacccaattataaatttt 387  Q
    |||||||||||||||||||||||||| ||||||||  | |||||||||| |||||    
T  44453318 gagttgcatatggatttctttcgagacagaattggctttcccaattatagatttt 44453264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 190 - 343
Target Start/End: Complemental strand, 19936167 - 19936015
Alignment:
Q  190 atttcttgggcttggtc--agctttaatgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtcaataatatg 287  Q
    |||| ||||||||||||  ||||||||||||||||||||   |||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||    
T  19936167 atttattgggcttggtctcagctttaatgcaaagcaaaa---agagttgggattgggagaagatcctaacgctaataatgcaggcttggtcaataatatg 19936071  T
Q  288 gttcatgagattcagggttctttttggttagtctcgctacgggctgagttgcatat 343  Q
    | |||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  19936070 ggtcatgagattcagggttctttttggttagtctcgctgcctgctgagttgcatat 19936015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 38302713 - 38302653
Alignment:
Q  333 gagttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagt 393  Q
    ||||||||||||||||||| |||||||||||||||  ||| |||||||| |||||| ||||    
T  38302713 gagttgcatatggatttctatcgagatagaattggcttactcaattatagattttcgtagt 38302653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 24069734 - 24069782
Alignment:
Q  345 gatttctttcgagatagaattggtctacccaattataaattttcttagt 393  Q
    ||||||| ||| |||||||||||||| |||||||||| |||| ||||||    
T  24069734 gatttctatcgtgatagaattggtcttcccaattatagatttccttagt 24069782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 25247897 - 25247793
Alignment:
Q  298 ttcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagtattt 397  Q
    |||| |||||| ||||||||| | |||| |  |||||||||||||||||||||| |||||    ||||| ||||||| |||||  |||| ||||||  ||    
T  25247897 ttcaaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtcgtt 25247798  T
Q  398 tattt 402  Q
    |||||    
T  25247797 tattt 25247793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 25311681 - 25311577
Alignment:
Q  298 ttcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagtattt 397  Q
    |||| |||||| ||||||||| | |||| |  |||||||||||||||||||||| |||||    ||||| ||||||| |||||  |||| ||||||  ||    
T  25311681 ttcaaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtcgtt 25311582  T
Q  398 tattt 402  Q
    |||||    
T  25311581 tattt 25311577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 8480063 - 8480195
Alignment:
Q  190 atttcttgggcttggt--cagctttaatgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtcaataatatg 287  Q
    |||| |||||||||||  |||||||||||||||||||||   ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  8480063 atttattgggcttggtttcagctttaatgcaaagcaaaa---agagttgggattgggagaaggtcctaacgctaacaatgaaggcttagtcaataatatg 8480159  T
Q  288 gttcatgagattcagggttctttttggttagtctcg 323  Q
    | ||||||||||||||||||||||||||||||||||    
T  8480160 ggtcatgagattcagggttctttttggttagtctcg 8480195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 26421346 - 26421226
Alignment:
Q  282 aatatggttcatgagattcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccaattata 381  Q
    ||||||| |||||||||| | |||| | ||||||||| | |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26421346 aatatgggtcatgagatttaaggttttatttggttagacacgcttcaagctgagttgcatatggatttctttcgagatagaattggtctacccaattata 26421247  T
Q  382 aattttcttagtattttattt 402  Q
     |||| |||||| ||||||||    
T  26421246 gatttccttagtcttttattt 26421226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 6479021 - 6479137
Alignment:
Q  54 attgcactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttg 153  Q
    ||||||||||||||||| |||||||||||||||||||||||| || | || || |||| |||||| |||||||| ||||||||| |||||||||||||||    
T  6479021 attgcactcaattctatcaaccatgtgctggaagaagcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttg 6479120  T
Q  154 tt--tgaagcagaccaa 168  Q
    ||  |||||||||||||    
T  6479121 tttatgaagcagaccaa 6479137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 168
Target Start/End: Original strand, 6519206 - 6519317
Alignment:
Q  59 actcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttgtt--t 156  Q
    |||||||||||| ||||||||||| ||||||||||||||  | || || |||| || ||| |||||||| |||||||||||||||||||||||||||  |    
T  6519206 actcaattctatcaaccatgtgcttgaagaagcagagctgaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttat 6519305  T
Q  157 gaagcagaccaa 168  Q
    ||||||||||||    
T  6519306 gaagcagaccaa 6519317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 6553746 - 6553810
Alignment:
Q  215 tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca 279  Q
    |||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  6553746 tgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtca 6553810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 6736711 - 6736647
Alignment:
Q  215 tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca 279  Q
    |||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  6736711 tgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtca 6736647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 6947990 - 6947926
Alignment:
Q  215 tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca 279  Q
    ||||||| |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  6947990 tgcaaagaaaaagaaagagttgggattgggagaaagtccttgcgctagtaatgaaggcttagtca 6947926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 5251152 - 5251061
Alignment:
Q  58 cactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacat 149  Q
    ||||||||||||| ||||||||| |||||||||| ||| |  | ||||| |||||||| ||||||||||| ||||||||||| |||||||||    
T  5251152 cactcaattctatcaaccatgtgttggaagaagcggagatgaagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat 5251061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 8479897 - 8479956
Alignment:
Q  25 agactacttgagtaataataatgttgatgattgcactcaattctattaaccatgtgctgg 84  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  8479897 agactacttcagtaataataatgtggatgattgcactcaattctatcaaccatgtgctgg 8479956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 8590719 - 8590603
Alignment:
Q  54 attgcactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttg 153  Q
    ||||||||  ||||||| ||| | || ||||| ||||||||| || | || || | ||||| ||| |||||||| |||||||||||||||||||||||||    
T  8590719 attgcacttgattctatcaacgaagtactggacgaagcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttg 8590620  T
Q  154 tt--tgaagcagaccaa 168  Q
    ||  |||||||||||||    
T  8590619 tttatgaagcagaccaa 8590603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 5299714 - 5299618
Alignment:
Q  58 cactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttgt 154  Q
    ||||||||||||| |||||||| || |||||||| |||  | | ||||| ||||||  |||||||||||| ||||||| ||| ||||||||||||||    
T  5299714 cactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgt 5299618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 8590450 - 8590386
Alignment:
Q  215 tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca 279  Q
    |||||||||||||||| ||||||||||||||||||||||    |||||||| |||||||||||||    
T  8590450 tgcaaagcaaaagaaaaagttgggattgggagaaggtccctgtgctagtaacgaaggcttagtca 8590386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 5269039 - 5268948
Alignment:
Q  58 cactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacat 149  Q
    ||||||||||||| ||||||||| |||||||||| ||| |  | || |  |||||||| ||||||||||| ||||||||||| |||||||||    
T  5269039 cactcaattctatcaaccatgtgttggaagaagctgagatgaagcagttccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat 5268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 6553477 - 6553579
Alignment:
Q  54 attgcactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttg 153  Q
    ||||||||  ||||||| ||||| || || || ||||||||| || | || || |||| || ||| |||||||| |||||||||||||||||||||||||    
T  6553477 attgcacttgattctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttg 6553576  T
Q  154 ttt 156  Q
    |||    
T  6553577 ttt 6553579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 8455644 - 8455528
Alignment:
Q  54 attgcactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttg 153  Q
    ||||||||  ||||||| ||||| || || || ||||||||| || | || || |||| || ||| |||||||| ||||||||||| |||||||||||||    
T  8455644 attgcacttgattctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttg 8455545  T
Q  154 tt--tgaagcagaccaa 168  Q
    ||  |||||||||||||    
T  8455544 tttatgaagcagaccaa 8455528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 8455375 - 8455311
Alignment:
Q  215 tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca 279  Q
    ||||||| ||| |||||||||| |||||||||||||||||   ||||| ||||||||||||||||    
T  8455375 tgcaaagaaaaggaaagagttgagattgggagaaggtccttgtgctaggaatgaaggcttagtca 8455311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 4387989 - 4388080
Alignment:
Q  58 cactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacat 149  Q
    ||||||||||||| |||| |||| |||||||||| ||| |  | || || |||||||| | ||||||||| ||||||||||| |||||||||    
T  4387989 cactcaattctatcaaccgtgtgttggaagaagcggagatgaagcagtaccaaagcatgtccgtgaagaagtggcttgatgatcttaaacat 4388080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 6736970 - 6736864
Alignment:
Q  64 attctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttgtt--tgaagc 161  Q
    ||||||| ||||| || || || ||||||||| || | || || |||| || ||| |||||||| |||||||||||||||||||||||| ||  ||||||    
T  6736970 attctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagc 6736871  T
Q  162 agaccaa 168  Q
    |||||||    
T  6736870 agaccaa 6736864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 6479290 - 6479354
Alignment:
Q  215 tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca 279  Q
    ||||| ||||||| | | ||||||||||| ||||||||| |  ||||||||||||||||||||||    
T  6479290 tgcaatgcaaaagtaggtgttgggattggcagaaggtcccagtgctagtaatgaaggcttagtca 6479354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 6948193 - 6948159
Alignment:
Q  120 gtgaagaattggcttgatgaacttaaacatgttgt 154  Q
    |||||||| ||||||||||||||||||||||||||    
T  6948193 gtgaagaagtggcttgatgaacttaaacatgttgt 6948159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 8479979 - 8480013
Alignment:
Q  122 gaagaattggcttgatgaacttaaacatgttgttt 156  Q
    ||||||||| |||||||||||||||||||||||||    
T  8479979 gaagaattgacttgatgaacttaaacatgttgttt 8480013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 4861356 - 4861260
Alignment:
Q  290 tcatgagattcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccaattataaattt 386  Q
    |||||| |||||||||||| ||||||||| | |||| || || ||||||||| | || |||| | |||| ||||||||   ||||||||||| ||||    
T  4861356 tcatgatattcagggttctgtttggttagacacgcttcgtgcagagttgcatttcgacttctatagagacagaattggctcacccaattatagattt 4861260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 4881363 - 4881267
Alignment:
Q  290 tcatgagattcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccaattataaattt 386  Q
    |||||| |||||||||||| ||||||||| | |||| || || ||||||||| | || |||| | |||| ||||||||   ||||||||||| ||||    
T  4881363 tcatgatattcagggttctgtttggttagacacgcttcgtgcagagttgcatttcgacttctatagagacagaattggctcacccaattatagattt 4881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 6785 - 6849
Alignment:
Q  215 tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca 279  Q
    |||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  6785 tgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtca 6849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 6516 - 6618
Alignment:
Q  54 attgcactcaattctattaaccatgtgctggaagaagcagagctataacaataacaaagcatatacgtgaagaattggcttgatgaacttaaacatgttg 153  Q
    ||||||||  ||||||| ||||| || || || ||||||||| || | || || |||| || ||| |||||||| |||||||||||||||||||||||||    
T  6516 attgcacttgattctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttg 6615  T
Q  154 ttt 156  Q
    |||    
T  6616 ttt 6618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 24361078 - 24360997
Alignment:
Q  290 tcatgagattcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtcta 371  Q
    |||||||||||| |||| | ||||||||| | |||| |  |||||||| |||||||||||||||||||| ||||||||||||    
T  24361078 tcatgagattcaaggttatatttggttagacacgcttctagctgagttacatatggatttctttcgagacagaattggtcta 24360997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 32234661 - 32234601
Alignment:
Q  333 gagttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagt 393  Q
    ||||| |||||||||||||||| ||| | ||||||||| ||||||| || ||||| |||||    
T  32234661 gagttacatatggatttctttcaagacaaaattggtctgcccaattgtagattttattagt 32234601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 28937267 - 28937321
Alignment:
Q  333 gagttgcatatggatttctttcgagatagaattggtctacccaattataaatttt 387  Q
    |||||| ||||||||||||||||||||||||||||  | ||||||||||||||||    
T  28937267 gagttgtatatggatttctttcgagatagaattggcttgcccaattataaatttt 28937321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 32021801 - 32021873
Alignment:
Q  333 gagttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagtattttatttttt 405  Q
    |||||| ||||| ||||||||||||| ||||||||  | |||||||||| |||||  ||||||||| ||||||    
T  32021801 gagttgtatatgaatttctttcgagacagaattggcttgcccaattatagattttagtagtattttttttttt 32021873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 1538206 - 1538149
Alignment:
Q  297 attcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttc 354  Q
    |||||||||||| ||||||||| | |||| | | | ||||||||||||||||||||||    
T  1538206 attcagggttctgtttggttagacacgcttccgacggagttgcatatggatttctttc 1538149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 22535806 - 22535766
Alignment:
Q  362 aattggtctacccaattataaattttcttagtattttattt 402  Q
    |||||||||| ||||||||| ||||||||||| ||||||||    
T  22535806 aattggtctatccaattatagattttcttagtcttttattt 22535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 19741883 - 19741931
Alignment:
Q  345 gatttctttcgagatagaattggtctacccaattataaattttcttagt 393  Q
    ||||||| ||| |||||||||||||| |||||||||| |||| ||||||    
T  19741883 gatttctatcgtgatagaattggtcttcccaattatagatttccttagt 19741931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 402
Target Start/End: Original strand, 15558572 - 15558640
Alignment:
Q  334 agttgcatatggatttctttcgagatagaattggtctacccaattataaattttcttagtattttattt 402  Q
    ||||||||||||||||||  || || ||||||| ||| |||||||||| |||| ||||||  |||||||    
T  15558572 agttgcatatggatttctaccgcgacagaattgatcttcccaattatagatttccttagtcatttattt 15558640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University