View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_19 (Length: 397)
Name: NF20803_low_19
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 157 - 389
Target Start/End: Complemental strand, 55379983 - 55379758
Alignment:
| Q |
157 |
atctaacatattactagtatattgtgctatcatggcttttttaaagtttaaattttagagcctgttattctcatgttgcaccggcatgcttgctgatatt |
256 |
Q |
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| T |
55379983 |
atctaacatattactagtatattgtgctatcatggcttttttaaaggttaaattttagagcctgttattctcatgttgcaccggcatgcttgctgatatt |
55379884 |
T |
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| Q |
257 |
gtatatgtggctaccggaaagttttcaaattatattacatgcataggtgcatgcatgtatacttatgatatatttcaatgaattttctcaggcatatatg |
356 |
Q |
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| T |
55379883 |
gtatatgtggctaccggaaagttttcaaattatattacatgcataggtgcatgcatgtatact-------tatttcaatgaattttctcaggcatatatg |
55379791 |
T |
|
| Q |
357 |
ttatgtccaaaagcagttggacataggtctgtg |
389 |
Q |
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| T |
55379790 |
ttatgtccaaaagcagttggacataggtctgtg |
55379758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 55380321 - 55380157
Alignment:
| Q |
1 |
cagttttgtttttctgctgattaatttaaccacctctattggcagaataaccatagtgtgtatcaataatacatcatgtacatttccttgttattatcca |
100 |
Q |
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| T |
55380321 |
cagttttgtttttctgctgattaatgtaaccacctctattggcagaataaccatagtgtgtatcaataatacatcatgtacatttccttgttattatcca |
55380222 |
T |
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| Q |
101 |
ataatctcccaaataccatcgaactatcttcaatatttattaatatttgaactagtatctaacat |
165 |
Q |
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| T |
55380221 |
ataatctcccaaataccatcgaactatcttcaatatttattaatatttgaactagtgtctaacat |
55380157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 17165932 - 17165852
Alignment:
| Q |
81 |
catttccttgttattatccaataatctcccaaataccatcgaactatcttcaatatttattaatatttgaactagtatcta |
161 |
Q |
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| T |
17165932 |
cattcccttattattatgcaataatctcccaaataccatagaattatcatcgatatttattcacatctgaaccagtatcta |
17165852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 41483140 - 41483203
Alignment:
| Q |
65 |
aataatacatcatgtacatttccttgttattatccaataatctcccaaataccatcgaactatc |
128 |
Q |
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| T |
41483140 |
aataatacatcacgtgcattcccttattattatgcaataatctcccaaataccatagaattatc |
41483203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 832139 - 832284
Alignment:
| Q |
21 |
ttaatttaaccacctctattggcagaataaccatagtgtgtatc---aataatacatcatgtacatttccttgttattatccaataatctcccaaatacc |
117 |
Q |
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| T |
832139 |
ttaatgtaaccatctctgttggcagaataaccacagaatgcatcattaataatacat-acgtacattcccttattattatccaataatcccccaaatatc |
832237 |
T |
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| Q |
118 |
atcgaactatcttcaatatttattaatatttgaactagtatctaaca |
164 |
Q |
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| T |
832238 |
atagaattatcattggtatttaatattatctgaaccagtatctaaca |
832284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 33215153 - 33215065
Alignment:
| Q |
81 |
catttccttgttattatccaataatctcccaaataccatcgaactatcttcaatatttattaatatttgaactagtatctaacatatta |
169 |
Q |
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| T |
33215153 |
cattcccttattattatgcaataatctcccaaataccattgaattatcatcggtatttattcacatctgaaccagtatctaacagatta |
33215065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 12987427 - 12987364
Alignment:
| Q |
65 |
aataatacatcatgtacatttccttgttattatccaataatctcccaaataccatcgaactatc |
128 |
Q |
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|||||||||||| || |||| |||| ||||||| | ||||||||||||||||||| ||| |||| |
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| T |
12987427 |
aataatacatcacgtgcattcccttattattatgctataatctcccaaataccatagaattatc |
12987364 |
T |
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