View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_2 (Length: 822)
Name: NF20803_low_2
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 776; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 13 - 808
Target Start/End: Original strand, 28471488 - 28472283
Alignment:
| Q |
13 |
aatattaacataaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggc |
112 |
Q |
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| T |
28471488 |
aatattaacataaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggc |
28471587 |
T |
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| Q |
113 |
ggctctattagattcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcag |
212 |
Q |
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| T |
28471588 |
ggctctattagattcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcag |
28471687 |
T |
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| Q |
213 |
tttcagattttgattctgattttttcttgaaaacaacgaggccatgattattgacaagactaacatgaacaatagatgaatttcgcagcaacgctgaaat |
312 |
Q |
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| T |
28471688 |
tttcagattttgattctgattttttcttgaaaacaacgaggccatgattattgacaagactaacatgaacaatagatgaatttcgcagcaacgctgaaat |
28471787 |
T |
|
| Q |
313 |
cggtgaagcatatcttatcatgttaatgttgtcgttgtcatcaaaatccaaaagcaaagcaccaattccattaggtttcagaatacgttcaacttcaagg |
412 |
Q |
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| T |
28471788 |
cggtgaagcatatcttatcatgttaatgttgtcgttgtcatcgaaatccaaaagcaaagcaccaattccattaggtttcagaatacgttcaacttcaagg |
28471887 |
T |
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| Q |
413 |
acaaccaatgcagggacagcaacttttcccaaatccttggacaaaacaaagtcgaacgattcatcgtggtgatgatcaagcgagtaaacaaaattcttct |
512 |
Q |
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| T |
28471888 |
acaaccaatgcagggacagcaacttttcccaaatccttggacaaaacaaagtcgaacgattcatcgtggtgatgatcaagcgagtaaacaaaattcttct |
28471987 |
T |
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| Q |
513 |
tgttgaatgagaaaacacgatggttaatcacattagagaaaccaagtttcttcagtgtggaaacagctatgtttgaagtttcaccaatacaaagagtttc |
612 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471988 |
tgttgaatgagaaaacacgatggttaatcacattagtgaaaccaagtttcttcagtgtggaaacagctatgtttgaagtttcaccaatacaaagagtttc |
28472087 |
T |
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| Q |
613 |
tgcttcgaaattcaataaccgttcaccttttagttctttgacaatacttgaaaccaagttgatttcttttttgcaactcaatgaatcaaaggaaccccaa |
712 |
Q |
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| T |
28472088 |
tgcttcgaaattcaataaccgttcaccttttagttctttgacaatacttgaaaccaagttgatttcttttttgcaactcaatgaatcaaaggaaccccaa |
28472187 |
T |
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| Q |
713 |
aaactgcttaagactctactctggaacaaataagaacctggtgttaaagtgaggtttgaatcttcttcgaatttgaagatgcagtcatgatcatag |
808 |
Q |
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| T |
28472188 |
aaactgtttaagactctactctggaacaaataagaacctggtgttaaagtgaggtttgaatcttcttcgaattcgatgatgcagtcatgatcatag |
28472283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 431
Target Start/End: Complemental strand, 40806300 - 40806240
Alignment:
| Q |
371 |
gcaccaattccattaggtttcagaatacgttcaacttcaaggacaaccaatgcagggacag |
431 |
Q |
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||||||||||||||||| || |||| ||||||||| ||||| |||| ||| |||||||||| |
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| T |
40806300 |
gcaccaattccattaggcttaagaacacgttcaacctcaagaacaagcaaagcagggacag |
40806240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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