View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_20 (Length: 395)
Name: NF20803_low_20
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 7370384 - 7370662
Alignment:
| Q |
10 |
aataatatcaagatcacaaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataaa |
109 |
Q |
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| T |
7370384 |
aataatatcaagatctcaaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaatcatataagatgttgataaaataaa |
7370483 |
T |
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| Q |
110 |
ctagaagttgcaacatttcaaaagagaagnnnnnnnnnnnnccattaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttgga |
209 |
Q |
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| T |
7370484 |
ctagaagttgcaacatttcaaaagagaagaaaaacaaaaaacgatcaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttgga |
7370583 |
T |
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| Q |
210 |
gacacttcactctatcctccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
288 |
Q |
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| T |
7370584 |
gacacttcactctatcctccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
7370662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 7322775 - 7322863
Alignment:
| Q |
46 |
actcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataaactagaagttgcaacatttcaaaagag |
135 |
Q |
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| T |
7322775 |
actcttcattcattttaaattgaagc-aaaaagaagcaaccatacaagacgataatcaagtaaactagaagttccaacatttcaaaagag |
7322863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 7291202 - 7291285
Alignment:
| Q |
50 |
ttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttg--ataaaataaactagaagttgcaacatttcaaaa |
132 |
Q |
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| T |
7291202 |
ttcattcattttaaattgaag-taaaaagaagcgatcatataagatgatataatcaaataaaccagaagttgcaacatttcaaaa |
7291285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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