View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_29 (Length: 350)
Name: NF20803_low_29
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 5694146 - 5693825
Alignment:
| Q |
20 |
gatggttctgccattgttaagtttaattggagcaagaaaggttcgatcgacagtactagcaccaacagtgatgatccaaggggcaggatttgacaaacta |
119 |
Q |
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| T |
5694146 |
gatggttctgccattgttaagtttaattggagcaagaaaggttcgatcgacagtactagcaccaacagtgatgatccaaggggcaggatttgacaaacta |
5694047 |
T |
|
| Q |
120 |
tgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgcacctttagcaatcacatcatcttcatatttca |
219 |
Q |
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| T |
5694046 |
tgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgcacccttagcaatcacatcatcttcatatttca |
5693947 |
T |
|
| Q |
220 |
atggaccataatgccctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctttaagcatatcaatgtttgcgcaagtgtttcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5693946 |
atggaccataatgccctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctttaagcatatcaatgtttgcgcaagtgtttcc |
5693847 |
T |
|
| Q |
320 |
ttcattttttggttttcctttg |
341 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
5693846 |
ttcgttttttggttttcctttg |
5693825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 28 - 340
Target Start/End: Complemental strand, 5684262 - 5683950
Alignment:
| Q |
28 |
tgccattgttaagtttaattggagcaagaaaggttcgatcgacagtactagcaccaacagtgatgatccaaggggcaggatttgacaaactatgtggaaa |
127 |
Q |
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|||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| | |
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| T |
5684262 |
tgccattgctcagcttaattggagcaagaaaggttcgatcgacagtactagcaccaaccgtgatgatccaaggggaaggatttgacaaactatgaggaga |
5684163 |
T |
|
| Q |
128 |
aggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgcacctttagcaatcacatcatcttcatatttcaatggacca |
227 |
Q |
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||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
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| T |
5684162 |
agggccagcatttccagcactacaaacaacaacaatgtttttccttacagcttgtaatgcacccttagcaatcacatcatcctcatatttcaatggcgca |
5684063 |
T |
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| Q |
228 |
taatgccctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctttaagcatatcaatgtttgcgcaagtgtttccttcatttt |
327 |
Q |
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| ||| ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||||| |
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| T |
5684062 |
ggaaacccaatggaaaggtttataacatcaacaccatcttcaattgcatcatctatagctttaagcatatcaatgttagtgcaaacatttccatcatttt |
5683963 |
T |
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| Q |
328 |
ttggttttccttt |
340 |
Q |
| |
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||||||||||||| |
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| T |
5683962 |
ttggttttccttt |
5683950 |
T |
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