View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20803_low_3 (Length: 663)
Name: NF20803_low_3
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 25 - 648
Target Start/End: Original strand, 5638513 - 5639137
Alignment:
| Q |
25 |
tgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttatagatca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638513 |
tgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttatagatca |
5638612 |
T |
|
| Q |
125 |
ccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgtatactgaaacactaaaagagaagaaagattgtaaatgtggaaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638613 |
ccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgtatactgaaacactaaaagagaagaaagattgtaaatgtggaaat |
5638712 |
T |
|
| Q |
225 |
taagaatttacttcctccaaactcaaatttaagtnnnnnnnntagtcatggtttgtggtccataatatataagaaaattctaattaattttactggatta |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638713 |
taagaatttacttcctccaaactcaaatttaagtaaaaaaaatagtcatggtttgtggtccataatatataagaaaattctaattaattttactggatta |
5638812 |
T |
|
| Q |
325 |
ctgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaagtttcaaaggaaatttagtga-gagaatgatagttcggagaatgc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5638813 |
ctgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaagtttcaaaggaaatttagtgaagagaatgatagttcggagaatgc |
5638912 |
T |
|
| Q |
424 |
aattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagtacgtatttagttaattttacttaaatttgagttcagagggagtg |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5638913 |
aattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagtacgtatttagttaattttacttaaatttgagttcggagggagtg |
5639012 |
T |
|
| Q |
524 |
tttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgc |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639013 |
tttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgc |
5639112 |
T |
|
| Q |
624 |
ataaccaagtgattggttgatgatg |
648 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5639113 |
ataaccaagtgattggttgatgatg |
5639137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 562 - 628
Target Start/End: Original strand, 22965261 - 22965327
Alignment:
| Q |
562 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
628 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataac |
22965327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 30634492 - 30634326
Alignment:
| Q |
25 |
tgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttatagatca |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30634492 |
tgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttatagatca |
30634393 |
T |
|
| Q |
125 |
ccaagtatggtagtgtcatatgtgatactg-ttcat-aaccttcttggatttccatgtatactgaaa |
189 |
Q |
| |
|
||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| || |||||||| |
|
|
| T |
30634392 |
ccaggtatggtagtgtcatttgtaatactgattcataaaccaacttagatttccaagtgtactgaaa |
30634326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 21423278 - 21423160
Alignment:
| Q |
25 |
tgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttatagatca |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21423278 |
tgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttatagatca |
21423179 |
T |
|
| Q |
125 |
ccaagtatggtagtgtcat |
143 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
21423178 |
ccaggtatggtagtgtcat |
21423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 564 - 628
Target Start/End: Complemental strand, 38954654 - 38954590
Alignment:
| Q |
564 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
628 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataac |
38954590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University