View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_31 (Length: 327)
Name: NF20803_low_31
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 42270252 - 42270557
Alignment:
| Q |
20 |
gaacgttagtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcat |
119 |
Q |
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| T |
42270252 |
gaacgttagtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcat |
42270351 |
T |
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| Q |
120 |
ccataaattcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacctaggtccattccatcaa |
219 |
Q |
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| T |
42270352 |
ccataaattcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacttaggtccattccaccaa |
42270451 |
T |
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| Q |
220 |
ttaaaggaatcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctatgct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
42270452 |
ttaaaggaatcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctctact |
42270551 |
T |
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| Q |
320 |
actcca |
325 |
Q |
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|||||| |
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| T |
42270552 |
actcca |
42270557 |
T |
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