View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_34 (Length: 316)
Name: NF20803_low_34
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 2151666 - 2151368
Alignment:
| Q |
8 |
ctcaatgattgtccaccaagaaggttcattcaaaacatagacat------cgacgatgattcacctttccaattggacaagtcttatgaaaatgatcatt |
101 |
Q |
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| T |
2151666 |
ctcaatgattgtccaccaagaaggttcattcaaaacatagacatagacatcgacgatgattcacctttccaattggacaagtcttatgaaaatgaccatt |
2151567 |
T |
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| Q |
102 |
atgaaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaaccatttgatgatcttcctaatataccttgtctaagcagtggcagttatacgat |
201 |
Q |
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| T |
2151566 |
atgaaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaaccatttgatgatcttcctaatataccttgtctaagcagtggcagttatacgat |
2151467 |
T |
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| Q |
202 |
tgtgtataccatagaatcacctcttactaatttgtggaattcatcatgtagtaaaattgggtttgctaaggttccagtcaaaaataattctggtgaacc |
300 |
Q |
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| T |
2151466 |
tgtgtataccatagaatcacctcttactaatttgtggaattcatcgtgtagtaaaattgggtttgctaaggttccagtcacaaataattctggtgaacc |
2151368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 2146254 - 2146076
Alignment:
| Q |
10 |
caatgattgtccaccaagaaggttcattcaaaacatagacatcgacgatgattcacctttccaattggacaagtcttatgaaaatgatcattatgaaaac |
109 |
Q |
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||||||||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||| ||||| |||| | | | ||||||||||||| |
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| T |
2146254 |
caatgattgtccaccaagaaggttccttcaaaacatagacctcaacgatgattcacttttccaacgggacagactttatcatagtactcattatgaaaac |
2146155 |
T |
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| Q |
110 |
gtaatatttctcaattgtaccaacaatgttgaaaaggaacca---tttgatgatcttcc---taatataccttgtctaagca |
185 |
Q |
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| T |
2146154 |
gtaacatttctcaattgtactaaaaa---tgcaaaggaaccaatgtttgatcatcttcctaataatataccttgtctaagca |
2146076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 2142036 - 2141893
Alignment:
| Q |
99 |
attatgaaaacgtaatatttctcaattgtaccaacaatgttgaaaaggaacca---tttgatgatcttcctaatataccttgtctaagcagtggcagtta |
195 |
Q |
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||||||||||||||| ||||||||| ||||| | |||| ||| ||| | |||| |||||||||||||||||||||||||||||||||| || || || |
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| T |
2142036 |
attatgaaaacgtaacatttctcaactgtactaccaattttgcaaacggaccaatgtttgatgatcttcctaatataccttgtctaagcaatgacaagta |
2141937 |
T |
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| Q |
196 |
tacgattgtgtataccatagaatcacctcttactaatttgtgga |
239 |
Q |
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| T |
2141936 |
ttcgatcatgtatacgttacaatcacctcttagtaatttgtgga |
2141893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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