View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20803_low_35 (Length: 313)
Name: NF20803_low_35
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_35 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 21183104 - 21182792
Alignment:
| Q |
1 |
aagaaaaagtgcttatcaactttctgtggaacgttagcaggaaactgggcactagcaaggctacggagtttcttggaaaactttgttgcaaaagaagtgt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21183104 |
aagaaaaagtgtttatcaactttctgtggaacgttagccggaaactggggactggcaaggctgcggagtttcttggaaaactttgttgcaaaagaagtgt |
21183005 |
T |
|
| Q |
101 |
cattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21183004 |
cattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccggc |
21182905 |
T |
|
| Q |
201 |
aacggtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgagacttggtcttgagaagaaca |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182904 |
aacagtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgagacttggtcttgagaagaaca |
21182805 |
T |
|
| Q |
301 |
ttagtggtttggc |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21182804 |
ttagtggtttggc |
21182792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 21205578 - 21205266
Alignment:
| Q |
1 |
aagaaaaagtgcttatcaactttctgtggaacgttagcaggaaactgggcactagcaaggctacggagtttcttggaaaactttgttgcaaaagaagtgt |
100 |
Q |
| |
|
||||||||||| ||||| | ||||| ||||| ||||| |||||||| ||||| || |||||||||||||| ||||| |||||||||||||| || || | |
|
|
| T |
21205578 |
aagaaaaagtgtttatcgattttcttgggaacattagctggaaactgtgcacttgctaggctacggagtttgttggagaactttgttgcaaaggatgtat |
21205479 |
T |
|
| Q |
101 |
cattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccggc |
200 |
Q |
| |
|
|||||| |||||| ||| |||||||||| || ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||| | || |
|
|
| T |
21205478 |
cattaaatgcaggaagaataggtttgaatagaggatgcttttttagtgaagaagctgaatgatgagtatttggtgggatttcatattcaaggatagcagc |
21205379 |
T |
|
| Q |
201 |
aacggtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgagacttggtcttgagaagaaca |
300 |
Q |
| |
|
|| || ||||||||||||| ||| |||| | ||||| ||||||||| |||||||||| || |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
21205378 |
gaccgttgtgttgtcaaaaggtccagggccagcggcatagggtctagcagtcattaagaatgccgcattgggatagtgtgacttggtattgagaagaaca |
21205279 |
T |
|
| Q |
301 |
ttagtggtttggc |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21205278 |
ttagtggtttggc |
21205266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 21853805 - 21853495
Alignment:
| Q |
1 |
aagaaaaagtgcttatcaactttctgtggaacgttagcaggaaactgggcactagcaaggctacggagtttcttggaaaactttgttgcaaaagaagtgt |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| |||||||| ||| | || | |||| | ||||| || | || ||||||||||| ||||||| |
|
|
| T |
21853805 |
aagaaaaagtgcttatcaactttttgaggaacattagctggaaactgagcatttgctaagctatgaagtttgttagtgaaatttgttgcaaatgaagtgt |
21853706 |
T |
|
| Q |
101 |
cattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccggc |
200 |
Q |
| |
|
|||||||| ||| ||| ||||||| |||||||||| ||||| ||||||||| |||||| |||||||| |||| ||||||||||| | ||| || || |
|
|
| T |
21853705 |
cattaagttgaggtagaataggtttcaaaagtggaagttttttgagtgaagaatttgaatggtgagtattaaatggaatttcatattctatgattccagc |
21853606 |
T |
|
| Q |
201 |
aacggtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgagacttggtcttgagaagaaca |
300 |
Q |
| |
|
||| || | |||||||||||| || ||||| |||||||||||||| || ||||||||| | ||||| || || |||| ||||| |||||||||||| |
|
|
| T |
21853605 |
aactgttgagttgtcaaaagtgccttggcctgtagcatatggtcttgctaacattaagaatgtagcatttgggtaatgaggtttggttttgagaagaaca |
21853506 |
T |
|
| Q |
301 |
ttagtggtttg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
21853505 |
ttagtggtttg |
21853495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University